PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4S2S

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV5-6-5*01	93.2	Mo_IGHV5-6-5*01	92.3	H1	13	H1-13-1	11	AASGFTFSTYAMS	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV5-6-5*01	93.2	Mo_IGHV5-6-5*01	66.7	H2	9	H2-9-1	14	SISTGDNTY	BBBAALBBB
A	heavy	Mus.musculus	Mo_IGHV5-6-5*01	93.2	Mo_IGHV5-6-5*01	50.0	H3	13	H3-13-*	-1	TRGRGDRGDLFGY	BBBABABBABBAB
A	heavy	Mus.musculus	Mo_IGHV5-6-5*01	93.2	Mo_IGHV5-6-5*01	100.0	H4	8	H4-8-*	-1	RDNARNIL	BBAABBBB
B	kappa	Mus.musculus	Mo_IGKV8-30*01	97.1	Mo_IGKV8-30*01	82.4	L1	17	L1-17-1	7	KSSQSLlyrgnqMNYLA	BBABBABBAAALBBBBB
B	kappa	Mus.musculus	Mo_IGKV8-30*01	97.1	Mo_IGKV8-30*01	100.0	L2	8	L2-8-1	6	YWASTRES	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV8-30*01	97.1	Mo_IGKV8-30*01	85.7	L3	9	L3-9-cis7-1	7	QQYYTYPRT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV8-30*01	97.1	Mo_IGKV8-30*01	83.3	L4	6	L4-6-1	7	GSGTEF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	93.2	Mo_IGHV5-6-5*01	92.3	H1	13	H1-13-1	10	AASGFTFSTYAMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	93.2	Mo_IGHV5-6-5*01	66.7	H2	9	H2-9-1	15	SISTGDNTY	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	93.2	Mo_IGHV5-6-5*01	50.0	H3	13	H3-13-*	-1	TRGRGDRGDLFGY	BBBABAABABBAB
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	93.2	Mo_IGHV5-6-5*01	100.0	H4	8	H4-8-1	6	RDNARNIL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV8-30*01	97.1	Mo_IGKV8-30*01	82.4	L1	17	L1-17-1	9	KSSQSLlyrgnqMNYLA	BBABBABBAAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV8-30*01	97.1	Mo_IGKV8-30*01	100.0	L2	8	L2-8-1	8	YWASTRES	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV8-30*01	97.1	Mo_IGKV8-30*01	85.7	L3	9	L3-9-cis7-1	7	QQYYTYPRT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV8-30*01	97.1	Mo_IGKV8-30*01	83.3	L4	6	L4-6-1	7	GSGTEF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022