PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4S1D

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	61.5	H1	13	H1-13-*	-1	TSSGFNNKDTFFQ	BBBLBABAABBBB
C	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	90.0	H2	10	H2-10-1	8	RIDPANGFTK	BBBAAALBBB
C	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	50.0	H3	13	H3-13-*	-1	TRWDTYGAAWFAY	BBBBBBEABBBBB
C	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	87.5	H4	8	H4-8-1	13	VDTSSNTA	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	90.9	L1	11	L1-11-2	5	RASGNIHNYLS	BBABBALLBBB
D	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	87.5	L2	8	L2-8-1	10	YSAKTLAD	BLEABBBB
D	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	71.4	L3	9	L3-9-2	22	QHFWSSIYT	BBAABABBB
D	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L4	6	L4-6-1	14	GSGTQY	EBEABB
E	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	61.5	H1	13	H1-13-*	-1	TSSGFNNKDTFFQ	BBBLBABAABBBB
E	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	90.0	H2	10	H2-10-1	8	RIDPANGFTK	BBBAAALBBB
E	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	50.0	H3	13	H3-13-*	-1	TRWDTYGAAWFAY	BBBBBBEABBBBB
E	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	87.5	H4	8	H4-8-1	7	VDTSSNTA	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	90.9	L1	11	L1-11-2	10	RASGNIHNYLS	BBABBALLBBB
F	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	87.5	L2	8	L2-8-1	7	YSAKTLAD	BLEABBBB
F	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	71.4	L3	9	L3-9-2	22	QHFWSSIYT	BBAABABBB
F	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L4	6	L4-6-1	10	GSGTQY	EBEABB
H	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	61.5	H1	13	H1-13-*	-1	TSSGFNNKDTFFQ	BBBLBABAABBBB
H	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	90.0	H2	10	H2-10-1	10	RIDPANGFTK	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	50.0	H3	13	H3-13-*	-1	TRWDTYGAAWFAY	BBBBBBEABBBBB
H	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	87.5	H4	8	H4-8-1	8	VDTSSNTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	90.9	L1	11	L1-11-2	7	RASGNIHNYLS	BBABBALLBBB
L	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	87.5	L2	8	L2-8-1	7	YSAKTLAD	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	71.4	L3	9	L3-9-2	24	QHFWSSIYT	BBAABABBB
L	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L4	6	L4-6-1	9	GSGTQY	EBEABB
O	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	61.5	H1	13	H1-13-*	-1	TSSGFNNKDTFFQ	BBBLBABAABBBB
O	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	90.0	H2	10	H2-10-1	9	RIDPANGFTK	BBBAAALBBB
O	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	50.0	H3	13	H3-13-*	-1	TRWDTYGAAWFAY	BBBBBBEABBBBB
O	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	87.5	H4	8	H4-8-1	10	VDTSSNTA	BBAAALBB
P	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	90.9	L1	11	L1-11-2	8	RASGNIHNYLS	BBABBALLBBB
P	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	87.5	L2	8	L2-8-1	9	YSAKTLAD	BLEABBBB
P	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	71.4	L3	9	L3-9-2	25	QHFWSSIYT	BBAABABBB
P	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L4	6	L4-6-1	11	GSGTQY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022