PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4RGM

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	81.8	L1	11	L1-11-2	10	RASQEISDYLT	BBABBALLBBB
B	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	75.0	L2	8	L2-8-1	9	YVASSLDS	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	85.7	L3	9	L3-9-cis7-1	8	LQYANYPWT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L4	6	L4-6-2	18	RSGSDY	BBEABB
C	heavy	Mus.musculus	Mo_IGHV9-4*02	93.2	Mo_IGHV9-4*02	76.9	H1	13	H1-13-1	12	KASGYIFTIAGIQ	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV9-4*02	93.2	Mo_IGHV9-4*02	90.0	H2	10	H2-10-1	14	WINTHSGVPE	BBBAAALBBB
C	heavy	Mus.musculus	Mo_IGHV9-4*02	93.2	Mo_IGHV9-4*02	100.0	H3	14	H3-14-*	-1	ARIYYGNNGGVMDY	BBBBAABAAAABAB
C	heavy	Mus.musculus	Mo_IGHV9-4*02	93.2	Mo_IGHV9-4*02	87.5	H4	8	H4-8-1	8	LETSARTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV9-4*02	93.2	Mo_IGHV9-4*02	76.9	H1	13	H1-13-1	10	KASGYIFTIAGIQ	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV9-4*02	93.2	Mo_IGHV9-4*02	90.0	H2	10	H2-10-6	16	WINTHSGVPE	BBBABLLBBB
H	heavy	Mus.musculus	Mo_IGHV9-4*02	93.2	Mo_IGHV9-4*02	100.0	H3	14	H3-14-*	-1	ARIYYGNNGGVMDY	BBBBAABAAABLAB
H	heavy	Mus.musculus	Mo_IGHV9-4*02	93.2	Mo_IGHV9-4*02	87.5	H4	8	H4-8-1	6	LETSARTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	81.8	L1	11	L1-11-2	12	RASQEISDYLT	BBABBALLBBB
L	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	75.0	L2	8	L2-8-1	8	YVASSLDS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	85.7	L3	9	L3-9-cis7-1	7	LQYANYPWT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L4	6	L4-6-2	17	RSGSDY	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022