PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4R4B

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	5	RASQGISSYLA	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L2	8	L2-8-1	5	YAASTLQS	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	28.6	L3	8	L3-8-*	-1	QHLIGLRS	BBABEALB
A	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L4	6	L4-6-1	8	GSGTEF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	69.2	H1	13	H1-13-4	15	GVYGESLSGHYWS	BBBLBBABLBBBB
B	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	66.7	H2	9	H2-9-*	-1	EIKHNGSPN	BBABBLBBB
B	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	100.0	H3	13	H3-13-*	-1	ARRSNWPYLPFDP	BBBBBBaBABBBb
B	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	75.0	H4	8	H4-8-1	14	LDMSKNQF	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	6	RASQGISSYLA	BBABBAEABBB
C	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L2	8	L2-8-*	-1	YAASTLqs
C	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	28.6	L3	8	L3-8-*	-1	QHLIGLRS	BBABEALB
C	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L4	6	L4-6-1	4	GSGTEF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	69.2	H1	13	H1-13-4	14	GVYGESLSGHYWS	BBBLBBABLBBBB
D	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	66.7	H2	9	H2-9-*	-1	EIKHNGSPN	BBBABEBBB
D	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	100.0	H3	13	H3-13-*	-1	ARRSNWPYLPFDP	BBBBABBLLBBBb
D	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	75.0	H4	8	H4-8-1	14	LDMSKNQF	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	7	RASQGISSYLA	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L2	8	L2-8-*	-1	YAASTLqs
E	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	28.6	L3	8	L3-8-*	-1	QHLIGLRS	BBABEALB
E	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L4	6	L4-6-1	6	GSGTEF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	69.2	H1	13	H1-13-4	14	GVYGESLSGHYWS	BBBLBBABLBBBB
F	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	66.7	H2	9	H2-9-*	-1	EIKHNGSPN	BBBABEBBB
F	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	100.0	H3	13	H3-13-*	-1	ARRSNWPYLPFDP	BBBBABBLLBBBb
F	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	75.0	H4	8	H4-8-1	14	LDMSKNQF	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	69.2	H1	13	H1-13-4	13	GVYGESLSGHYWS	BBBLBBABLBBBB
H	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	66.7	H2	9	H2-9-*	-1	EIKHNGSPN	BBABBLBBB
H	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	100.0	H3	13	H3-13-*	-1	ARRSNWPYLPFDP	BBBBBBaBABBBb
H	heavy	Homo.sapiens	Hu_IGHV4-34*12	89.0	Hu_IGHV4-34*12	75.0	H4	8	H4-8-1	14	LDMSKNQF	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L1	11	L1-11-1	6	RASQGISSYLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L2	8	L2-8-1	5	YAASTLQS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	28.6	L3	8	L3-8-*	-1	QHLIGLRS	BBABEALB
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100.0	L4	6	L4-6-1	7	GSGTEF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022