PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4QWW

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Mus.musculus	Mo_IGKV4-61*01	91.3	Mo_IGKV4-61*01	100.0	L1	10	L1-10-1	7	SASSSVSYMY	BBABBBABBB
C	kappa	Mus.musculus	Mo_IGKV4-61*01	91.3	Mo_IGKV4-61*01	100.0	L2	8	L2-8-1	13	YRTSNLAS	BLEABBBB
C	kappa	Mus.musculus	Mo_IGKV4-61*01	91.3	Mo_IGKV4-61*01	62.5	L3	9	L3-9-cis7-1	6	QQYNSHPMT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV4-61*01	91.3	Mo_IGKV4-61*01	100.0	L4	6	L4-6-1	12	GSGTSY	EBEABB
D	heavy	Mus.musculus	Mo_IGHV10-3*01	98.6	Mo_IGHV10-3*01	100.0	H1	13	H1-13-1	14	AASGFTFNTYAMH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV10-3*01	98.6	Mo_IGHV10-3*01	75.0	H2	12	H2-12-1	13	RIRSKSNkyATH	BBBBAAALLBBB
D	heavy	Mus.musculus	Mo_IGHV10-3*01	98.6	Mo_IGHV10-3*01	100.0	H3	16	H3-16-*	-1	VREGSYYdsSYGAMDY
D	heavy	Mus.musculus	Mo_IGHV10-3*01	98.6	Mo_IGHV10-3*01	87.5	H4	8	H4-8-1	3	RDDSQTML	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV4-61*01	91.3	Mo_IGKV4-61*01	100.0	L1	10	L1-10-1	6	SASSSVSYMY	BBABBBABBB
E	kappa	Mus.musculus	Mo_IGKV4-61*01	91.3	Mo_IGKV4-61*01	100.0	L2	8	L2-8-1	13	YRTSNLAS	BLEABBBB
E	kappa	Mus.musculus	Mo_IGKV4-61*01	91.3	Mo_IGKV4-61*01	62.5	L3	9	L3-9-cis7-1	8	QQYNSHPMT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV4-61*01	91.3	Mo_IGKV4-61*01	100.0	L4	6	L4-6-1	11	GSGTSY	EBEABB
F	heavy	Mus.musculus	Mo_IGHV10-3*01	98.6	Mo_IGHV10-3*01	100.0	H1	13	H1-13-1	14	AASGFTFNTYAMH	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV10-3*01	98.6	Mo_IGHV10-3*01	75.0	H2	12	H2-12-1	11	RIRSKSNkyATH	BBBBAAALLBBB
F	heavy	Mus.musculus	Mo_IGHV10-3*01	98.6	Mo_IGHV10-3*01	100.0	H3	16	H3-16-*	-1	VREGSYYdsSYGAMDY
F	heavy	Mus.musculus	Mo_IGHV10-3*01	98.6	Mo_IGHV10-3*01	87.5	H4	8	H4-8-1	7	RDDSQTML	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022