PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4QNP

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	heavy	Mus.musculus	Mo_IGHV10-1*02	93.2	Mo_IGHV10-1*02	100.0	H1	13	H1-13-1	9	AASGFTFNTYAMN	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV10-1*02	93.2	Mo_IGHV10-1*02	91.7	H2	12	H2-12-1	9	RIRSKSNnyATF	BBBBAAALLBBB
E	heavy	Mus.musculus	Mo_IGHV10-1*02	93.2	Mo_IGHV10-1*02	50.0	H3	15	H3-15-*	-1	VRPSIYYYaSGYLDV
E	heavy	Mus.musculus	Mo_IGHV10-1*02	93.2	Mo_IGHV10-1*02	100.0	H4	8	H4-8-1	7	RDDSQSML	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV4-72*01	98.6	Mo_IGKV4-72*01	90.0	L1	10	L1-10-1	10	RTSSSVSYMH	BBABBBABBB
F	kappa	Mus.musculus	Mo_IGKV4-72*01	98.6	Mo_IGKV4-72*01	100.0	L2	8	L2-8-1	6	YATSNLAS	BLLABBBB
F	kappa	Mus.musculus	Mo_IGKV4-72*01	98.6	Mo_IGKV4-72*01	87.5	L3	9	L3-9-cis7-1	13	QQWNSNPPT	BBBABBbBB
F	kappa	Mus.musculus	Mo_IGKV4-72*01	98.6	Mo_IGKV4-72*01	100.0	L4	6	L4-6-1	15	GSGTSY	EBEABB
H	heavy	Mus.musculus	Mo_IGHV10-1*02	93.2	Mo_IGHV10-1*02	100.0	H1	13	H1-13-1	10	AASGFTFNTYAMN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV10-1*02	93.2	Mo_IGHV10-1*02	91.7	H2	12	H2-12-1	8	RIRSKSNnyATF	BBBBAAALLBBB
H	heavy	Mus.musculus	Mo_IGHV10-1*02	93.2	Mo_IGHV10-1*02	50.0	H3	15	H3-15-*	-1	VRPSIYYYaSGYLDV
H	heavy	Mus.musculus	Mo_IGHV10-1*02	93.2	Mo_IGHV10-1*02	100.0	H4	8	H4-8-1	7	RDDSQSML	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV4-72*01	98.6	Mo_IGKV4-72*01	90.0	L1	10	L1-10-1	10	RTSSSVSYMH	BBABBBABBB
L	kappa	Mus.musculus	Mo_IGKV4-72*01	98.6	Mo_IGKV4-72*01	100.0	L2	8	L2-8-1	6	YATSNLAS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV4-72*01	98.6	Mo_IGKV4-72*01	87.5	L3	9	L3-9-cis7-1	13	QQWNSNPPT	BBBABBbBB
L	kappa	Mus.musculus	Mo_IGKV4-72*01	98.6	Mo_IGKV4-72*01	100.0	L4	6	L4-6-1	15	GSGTSY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022