PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4QHK

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
I	heavy	Homo.sapiens	Hu_IGHV4-59*03	100.0	Hu_IGHV4-59*03	100.0	H1	13	H1-13-*	-1	TVSGGSISSYYWS	BBBEEbBLABBBB
I	heavy	Homo.sapiens	Hu_IGHV4-59*03	100.0	Hu_IGHV4-59*03	100.0	H2	9	H2-9-1	17	YIYYSGSTN	BBBAALBBB
I	heavy	Homo.sapiens	Hu_IGHV4-59*03	100.0	Hu_IGHV4-59*03	100.0	H3	15	H3-15-*	-1	ASLPrgqlVNAYFDY
I	heavy	Homo.sapiens	Hu_IGHV4-59*03	100.0	Hu_IGHV4-59*03	100.0	H4	8	H4-8-1	19	VDTSKNQF	BBAAALBB
J	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L1	11	L1-11-*	-1	SGDKLGDKYAC	BBBbBEABBBB
J	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L2	8	L2-8-1	22	YQDSKRPS	BLEABBBB
J	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	62.5	L3	10	L3-10-*	-1	QAWDSFSTFV	BBALalAEBB
J	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	17	NSGNTA	BBEABB
K	heavy	Homo.sapiens	Hu_IGHV4-59*03	100.0	Hu_IGHV4-59*03	100.0	H1	13	H1-13-*	-1	TVSGGSISSYYWS	BBBEEbBLABBBB
K	heavy	Homo.sapiens	Hu_IGHV4-59*03	100.0	Hu_IGHV4-59*03	100.0	H2	9	H2-9-1	17	YIYYSGSTN	BBBAALBBB
K	heavy	Homo.sapiens	Hu_IGHV4-59*03	100.0	Hu_IGHV4-59*03	100.0	H3	15	H3-15-*	-1	ASLPrgqlVNAYFDY
K	heavy	Homo.sapiens	Hu_IGHV4-59*03	100.0	Hu_IGHV4-59*03	100.0	H4	8	H4-8-1	20	VDTSKNQF	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L1	11	L1-11-*	-1	SGDKLGDKYAC	BBBbBEABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L2	8	L2-8-1	23	YQDSKRPS	BLEABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	62.5	L3	10	L3-10-*	-1	QAWDSFSTFV	BBALalAEBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	17	NSGNTA	BBEABB
M	heavy	Homo.sapiens	Hu_IGHV4-59*03	100.0	Hu_IGHV4-59*03	100.0	H1	13	H1-13-*	-1	TVSGGSISSYYWS	BBBEEbBLABBBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*03	100.0	Hu_IGHV4-59*03	100.0	H2	9	H2-9-1	17	YIYYSGSTN	BBBAALBBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*03	100.0	Hu_IGHV4-59*03	100.0	H3	15	H3-15-*	-1	ASLPRgQLVNAYFDY
M	heavy	Homo.sapiens	Hu_IGHV4-59*03	100.0	Hu_IGHV4-59*03	100.0	H4	8	H4-8-1	20	VDTSKNQF	BBAAALBB
N	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L1	11	L1-11-*	-1	SGDKLGDKYAC	BBBbBEABBBB
N	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L2	8	L2-8-1	22	YQDSKRPS	BLEABBBB
N	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	62.5	L3	10	L3-10-*	-1	QAWDSFSTFV	BBAEaAaBBB
N	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	17	NSGNTA	BBEABB
O	heavy	Homo.sapiens	Hu_IGHV4-59*03	100.0	Hu_IGHV4-59*03	100.0	H1	13	H1-13-*	-1	TVSGGSISSYYWS	BBBEEbBLABBBB
O	heavy	Homo.sapiens	Hu_IGHV4-59*03	100.0	Hu_IGHV4-59*03	100.0	H2	9	H2-9-1	18	YIYYSGSTN	BBBAALBBB
O	heavy	Homo.sapiens	Hu_IGHV4-59*03	100.0	Hu_IGHV4-59*03	100.0	H3	15	H3-15-*	-1	ASLPRgQLVNAYFDY
O	heavy	Homo.sapiens	Hu_IGHV4-59*03	100.0	Hu_IGHV4-59*03	100.0	H4	8	H4-8-1	19	VDTSKNQF	BBAAALBB
P	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L1	11	L1-11-*	-1	SGDKLGDKYAC	BBBbBEABBBB
P	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L2	8	L2-8-1	22	YQDSKRPS	BLEABBBB
P	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	62.5	L3	10	L3-10-cis78-*	-1	QAWDSFSTFV	BBAEaLaBBB
P	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	17	NSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022