PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4PY7

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-30*08	93.2	Hu_IGHV3-30*08	69.2	H1	13	H1-13-1	14	AASEFTFRMYATH	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-30*08	93.2	Hu_IGHV3-30*08	90.0	H2	10	H2-10-2	14	LISYDGSNKY	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-30*08	93.2	Hu_IGHV3-30*08	100.0	H3	15	H3-15-*	-1	ARDLGGYfIRGIMDV
A	heavy	Homo.sapiens	Hu_IGHV3-30*08	93.2	Hu_IGHV3-30*08	75.0	H4	8	H4-8-1	10	RDNSMNTV	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-12*01	98.5	Hu_IGKV1-12*01	100.0	L1	11	L1-11-1	22	RASQGISSWLA	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV1-12*01	98.5	Hu_IGKV1-12*01	100.0	L2	8	L2-8-*	-1	YAASSLQS	BEAABBBA
B	kappa	Homo.sapiens	Hu_IGKV1-12*01	98.5	Hu_IGKV1-12*01	100.0	L3	9	L3-9-cis7-1	18	QQANSFPLT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV1-12*01	98.5	Hu_IGKV1-12*01	100.0	L4	6	L4-6-1	18	GSGTDF	EBEABB
I	heavy	Homo.sapiens	Hu_IGHV3-30*08	93.2	Hu_IGHV3-30*08	69.2	H1	13	H1-13-*	-1	AASEFTFRMYATH	BBEbBBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV3-30*08	93.2	Hu_IGHV3-30*08	90.0	H2	10	H2-10-*	-1	LISYDGSNKY	BBBAALABlB
I	heavy	Homo.sapiens	Hu_IGHV3-30*08	93.2	Hu_IGHV3-30*08	100.0	H3	15	H3-15-*	-1	ARDLGGYfIRGIMDV
I	heavy	Homo.sapiens	Hu_IGHV3-30*08	93.2	Hu_IGHV3-30*08	75.0	H4	8	H4-8-1	10	RDNSMNTV	BBAAALBB
J	kappa	Homo.sapiens	Hu_IGKV1-12*01	98.5	Hu_IGKV1-12*01	100.0	L1	11	L1-11-1	21	RASQGISSWLA	BBABBAEABBB
J	kappa	Homo.sapiens	Hu_IGKV1-12*01	98.5	Hu_IGKV1-12*01	100.0	L2	8	L2-8-*	-1	YAASSLQS	BLEABBBA
J	kappa	Homo.sapiens	Hu_IGKV1-12*01	98.5	Hu_IGKV1-12*01	100.0	L3	9	L3-9-cis7-1	19	QQANSFPLT	BBAABBbBB
J	kappa	Homo.sapiens	Hu_IGKV1-12*01	98.5	Hu_IGKV1-12*01	100.0	L4	6	L4-6-1	23	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022