PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4PLJ

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Mus.musculus	Mo_IGKV12-46*01	97.1	Mo_IGKV12-46*01	90.9	L1	11	L1-11-*	-1	RASENIYSNLV	BBABBBBLBBB
C	kappa	Mus.musculus	Mo_IGKV12-46*01	97.1	Mo_IGKV12-46*01	87.5	L2	8	L2-8-4	11	YAATNLPD	BEAABBBB
C	kappa	Mus.musculus	Mo_IGKV12-46*01	97.1	Mo_IGKV12-46*01	85.7	L3	9	L3-9-cis7-1	22	QHFWETPFT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV12-46*01	97.1	Mo_IGKV12-46*01	100.0	L4	6	L4-6-1	8	GSGTQY	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1S29*02	95.8	Mo_IGHV1S29*02	92.3	H1	13	H1-13-1	6	KASGYTFTDFNMH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1S29*02	95.8	Mo_IGHV1S29*02	90.0	H2	10	H2-10-1	9	YIYPYNGITG	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1S29*02	95.8	Mo_IGHV1S29*02	100.0	H3	16	H3-16-*	-1	ARERFGvgNNYAWFTY
D	heavy	Mus.musculus	Mo_IGHV1S29*02	95.8	Mo_IGHV1S29*02	87.5	H4	8	H4-8-1	6	VDNSSSSA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV1S29*02	95.8	Mo_IGHV1S29*02	92.3	H1	13	H1-13-1	9	KASGYTFTDFNMH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1S29*02	95.8	Mo_IGHV1S29*02	90.0	H2	10	H2-10-1	8	YIYPYNGITG	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1S29*02	95.8	Mo_IGHV1S29*02	100.0	H3	16	H3-16-*	-1	ARERFGvgNNYAWFTY
H	heavy	Mus.musculus	Mo_IGHV1S29*02	95.8	Mo_IGHV1S29*02	87.5	H4	8	H4-8-1	7	VDNSSSSA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV12-46*01	97.1	Mo_IGKV12-46*01	90.9	L1	11	L1-11-2	7	RASENIYSNLV	BBABBALLBBB
L	kappa	Mus.musculus	Mo_IGKV12-46*01	97.1	Mo_IGKV12-46*01	87.5	L2	8	L2-8-4	9	YAATNLPD	BEAABBBB
L	kappa	Mus.musculus	Mo_IGKV12-46*01	97.1	Mo_IGKV12-46*01	85.7	L3	9	L3-9-cis7-*	-1	QHFWETPFT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV12-46*01	97.1	Mo_IGKV12-46*01	100.0	L4	6	L4-6-1	7	GSGTQY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022