PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4PFE

#CDRs = 4; #Clusters = 4.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Aequorea.victoria	Al_IGHV3S53*01_VHH	91.8	Al_IGHV3S53*01_VHH	38.5	H1	13	H1-13-1	10	AASGFPVNRYSMR	BBBLBBAAABBBB
A	heavy	Aequorea.victoria	Al_IGHV3S53*01_VHH	91.8	CDRLenMismatch	-1.0	H2	10	H2-10-2	12	GMSSAGDRSS	BBBAALABBB
A	heavy	Aequorea.victoria	Al_IGHV3S53*01_VHH	91.8	Al_IGHV3S53*01_VHH	50.0	H3	8	H3-8-*	-1	NVNVGFEY	BBBBLBBB
A	heavy	Aequorea.victoria	Al_IGHV3S53*01_VHH	91.8	Al_IGHV3S53*01_VHH	75.0	H4	8	H4-8-1	8	RDDARNTV	BBAAALBB
B	heavy	Aequorea.victoria	Al_IGHV3S53*01_VHH	91.8	Al_IGHV3S53*01_VHH	38.5	H1	13	H1-13-1	10	AASGFPVNRYSMR	BBBLBBAAABBBB
B	heavy	Aequorea.victoria	Al_IGHV3S53*01_VHH	91.8	CDRLenMismatch	-1.0	H2	10	H2-10-2	12	GMSSAGDRSS	BBBAALABBB
B	heavy	Aequorea.victoria	Al_IGHV3S53*01_VHH	91.8	Al_IGHV3S53*01_VHH	50.0	H3	8	H3-8-*	-1	NVNVGFEY	BBBBLBBB
B	heavy	Aequorea.victoria	Al_IGHV3S53*01_VHH	91.8	Al_IGHV3S53*01_VHH	75.0	H4	8	H4-8-1	8	RDDARNTV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022