PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4P3D

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV5-9*04	91.8	Mo_IGHV5-9*04	76.9	H1	13	H1-13-1	6	AASGFIFSNYAMS	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV5-9*04	91.8	Mo_IGHV5-9*04	80.0	H2	10	H2-10-2	12	TISGGGRNIY	BBBAALABBB
A	heavy	Mus.musculus	Mo_IGHV5-9*04	91.8	Mo_IGHV5-9*04	50.0	H3	11	H3-11-*	-1	SRENYGSSFTY	BBBBBLBABAB
A	heavy	Mus.musculus	Mo_IGHV5-9*04	91.8	Mo_IGHV5-9*04	87.5	H4	8	H4-8-1	8	RDNARNTL	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	98.6	Mo_IGKV1-117*01	100.0	L1	16	L1-16-1	10	RSSQSIvhsngNTYLE	BBABBABBAALBBBBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	98.6	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	6	YKVSNRFS	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	98.6	Mo_IGKV1-117*01	85.7	L3	9	L3-9-cis7-1	11	FQGSHAPYT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	98.6	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV5-9*04	91.8	Mo_IGHV5-9*04	76.9	H1	13	H1-13-1	8	AASGFIFSNYAMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-9*04	91.8	Mo_IGHV5-9*04	80.0	H2	10	H2-10-2	13	TISGGGRNIY	BBBAALABBB
H	heavy	Mus.musculus	Mo_IGHV5-9*04	91.8	Mo_IGHV5-9*04	50.0	H3	11	H3-11-*	-1	SRENYGSSFTY	BBBBBLBABAB
H	heavy	Mus.musculus	Mo_IGHV5-9*04	91.8	Mo_IGHV5-9*04	87.5	H4	8	H4-8-1	7	RDNARNTL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	98.6	Mo_IGKV1-117*01	100.0	L1	16	L1-16-1	9	RSSQSIvhsngNTYLE	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	98.6	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	5	YKVSNRFS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	98.6	Mo_IGKV1-117*01	85.7	L3	9	L3-9-cis7-1	10	FQGSHAPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	98.6	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022