PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4OJF

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV5-9*03	83.3	Mo_IGHV5-9*03	84.6	H1	13	H1-13-1	9	AASGFTFSNYGMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-9*03	83.3	Mo_IGHV5-9*03	70.0	H2	10	H2-10-6	11	SIRSGGGRTY	BBBABLLBBB
H	heavy	Mus.musculus	Mo_IGHV5-9*03	83.3	Mo_IGHV5-9*03	50.0	H3	12	H3-12-1	20	VRYDHYSGSSDY	BBBBAAALBBAB
H	heavy	Mus.musculus	Mo_IGHV5-9*03	83.3	Mo_IGHV5-9*03	87.5	H4	8	H4-8-1	4	RDNAKNSL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-135*01	86.8	Mo_IGKV1-135*01	100.0	L1	16	L1-16-1	5	KSSQSLldsdgKTYLN	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV1-135*01	86.8	Mo_IGKV1-135*01	100.0	L2	8	L2-8-1	7	YLVSKLDS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV1-135*01	86.8	Mo_IGKV1-135*01	100.0	L3	9	L3-9-cis7-1	10	WQGTHFPRT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-135*01	86.8	Mo_IGKV1-135*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022