PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4ODU

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	100.0	H1	13	H1-13-1	8	AASGFTFNTYAMN	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	100.0	H2	12	H2-12-1	7	RIRSKsnNYATY	BBBBAAALLBBB
A	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	50.0	H3	18	H3-18-*	-1	VRHRgaplYYGNGAWFAY
A	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	100.0	H4	8	H4-8-1	3	RDDSQSML	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	100.0	L1	11	L1-11-2	5	RASQDISNYLN	BBABBALLBBB
B	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	87.5	L2	8	L2-8-1	8	YYTSRLRS	BLEABBBB
B	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	100.0	L3	9	L3-9-cis7-1	7	QQGNTLPWT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	100.0	L4	6	L4-6-1	6	GSGTDY	EBEABB
H	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	100.0	H1	13	H1-13-1	9	AASGFTFNTYAMN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	100.0	H2	12	H2-12-1	7	RIRSKsnNYATY	BBBBAAALLBBB
H	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	50.0	H3	18	H3-18-*	-1	VRHRgaplYYGNGAWFAY
H	heavy	Mus.musculus	Mo_IGHV10-1*02	100.0	Mo_IGHV10-1*02	100.0	H4	8	H4-8-1	4	RDDSQSML	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	100.0	L1	11	L1-11-2	5	RASQDISNYLN	BBABBALLBBB
L	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	87.5	L2	8	L2-8-1	8	YYTSRLRS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	100.0	L3	9	L3-9-cis7-1	7	QQGNTLPWT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	100.0	L4	6	L4-6-1	7	GSGTDY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022