PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4NM4

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	84.6	H1	13	H1-13-1	10	KASGYTFTAYSMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	70.0	H2	10	H2-10-1	15	WINTAIGNTQ	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	100.0	H3	14	H3-14-*	-1	ARGASWDARGWSGY	BBBABAALBBBBAB
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	75.0	H4	8	H4-8-1	8	RDTSARTS	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	84.6	H1	13	H1-13-1	10	KASGYTFTAYSMH	BBBLBBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	70.0	H2	10	H2-10-1	15	WINTAIGNTQ	BBBAAALBBB
I	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	100.0	H3	14	H3-14-*	-1	ARGASWDARGWSGY	BBBABAALBBBBAB
I	heavy	Homo.sapiens	Hu_IGHV1-3*04	89.0	Hu_IGHV1-3*04	75.0	H4	8	H4-8-1	7	RDTSARTS	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	82.4	L1	17	L1-17-1	7	KSSQSVfssstnKNYLA	BBABBABBAAALBBBBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	87.5	L2	8	L2-8-1	8	YWSSTRES	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	57.1	L3	9	L3-9-cis7-1	7	HQYYTAPWT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
M	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	82.4	L1	17	L1-17-1	7	KSSQSVfssstnKNYLA	BBABBABBAAALBBBBB
M	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	87.5	L2	8	L2-8-1	7	YWSSTRES	BLLABBBB
M	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	57.1	L3	9	L3-9-cis7-1	7	HQYYTAPWT	BBAABBbBB
M	kappa	Homo.sapiens	Hu_IGKV4-1*01	94.2	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022