PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4NCC

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
1	kappa	Mus.musculus	Mo_IGKV4-57*01	100.0	Mo_IGKV4-57*01	100.0	L1	10	L1-10-1	7	SASSSVSYMH	BBABBBABBB
1	kappa	Mus.musculus	Mo_IGKV4-57*01	100.0	Mo_IGKV4-57*01	100.0	L2	8	L2-8-1	9	YSTSNLAS	BLEABBBB
1	kappa	Mus.musculus	Mo_IGKV4-57*01	100.0	Mo_IGKV4-57*01	87.5	L3	9	L3-9-cis7-1	14	QQRSSYPFT	BBAABBbBB
1	kappa	Mus.musculus	Mo_IGKV4-57*01	100.0	Mo_IGKV4-57*01	100.0	L4	6	L4-6-1	16	GSGTSY	EEEABB
2	heavy	Mus.musculus	Mo_IGHV4-1*02	97.3	Mo_IGHV4-1*02	100.0	H1	13	H1-13-1	11	AASGFDFSRYWMS	BBBLBBAAABBBB
2	heavy	Mus.musculus	Mo_IGHV4-1*02	97.3	Mo_IGHV4-1*02	80.0	H2	10	H2-10-2	14	QINPHSSTIN	BBBAALABBB
2	heavy	Mus.musculus	Mo_IGHV4-1*02	97.3	Mo_IGHV4-1*02	100.0	H3	12	H3-12-*	-1	ARLLRYFYALDY	BBBBEABEBBAB
2	heavy	Mus.musculus	Mo_IGHV4-1*02	97.3	Mo_IGHV4-1*02	100.0	H4	8	H4-8-1	9	RDNAKNTL	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV4-1*02	97.3	Mo_IGHV4-1*02	100.0	H1	13	H1-13-1	10	AASGFDFSRYWMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV4-1*02	97.3	Mo_IGHV4-1*02	80.0	H2	10	H2-10-2	14	QINPHSSTIN	BBBAALABBB
H	heavy	Mus.musculus	Mo_IGHV4-1*02	97.3	Mo_IGHV4-1*02	100.0	H3	12	H3-12-*	-1	ARLLRYFYALDY	BBBBEABEBBAB
H	heavy	Mus.musculus	Mo_IGHV4-1*02	97.3	Mo_IGHV4-1*02	100.0	H4	8	H4-8-1	9	RDNAKNTL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV4-57*01	100.0	Mo_IGKV4-57*01	100.0	L1	10	L1-10-1	8	SASSSVSYMH	BBABBBABBB
L	kappa	Mus.musculus	Mo_IGKV4-57*01	100.0	Mo_IGKV4-57*01	100.0	L2	8	L2-8-1	9	YSTSNLAS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV4-57*01	100.0	Mo_IGKV4-57*01	87.5	L3	9	L3-9-cis7-1	14	QQRSSYPFT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV4-57*01	100.0	Mo_IGKV4-57*01	100.0	L4	6	L4-6-1	16	GSGTSY	EEEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022