PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4MXW

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV3-74*03	86.3	Hu_IGHV3-74*03	69.2	H1	13	H1-13-1	16	AASGYTFTSYVIH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-74*03	86.3	Hu_IGHV3-74*03	20.0	H2	10	H2-10-1	21	YNNPYNAGTN	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV3-74*03	86.3	Hu_IGHV3-74*03	50.0	H3	11	H3-11-*	-1	SRPTMLPWFAY	BBBABAABBAB
H	heavy	Homo.sapiens	Hu_IGHV3-74*03	86.3	Hu_IGHV3-74*03	50.0	H4	8	H4-8-1	17	SDKSKNTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	54.5	L1	11	L1-11-1	13	RASQAVSSAVA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	37.5	L2	8	L2-8-1	11	YSASHRYT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-*	-1	QESYSTPWT	BBAABBaLB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	24	GSGTDF	EBEABB
V	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	54.5	L1	11	L1-11-1	13	RASQAVSSAVA	BBABBAEABBB
V	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	37.5	L2	8	L2-8-1	11	YSASHRYT	BLLABBBB
V	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-*	-1	QESYSTPWT	BBAABBaLB
V	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	23	GSGTDF	EBEABB
W	heavy	Homo.sapiens	Hu_IGHV3-74*03	86.3	Hu_IGHV3-74*03	69.2	H1	13	H1-13-1	17	AASGYTFTSYVIH	BBBLBBAAABBBB
W	heavy	Homo.sapiens	Hu_IGHV3-74*03	86.3	Hu_IGHV3-74*03	20.0	H2	10	H2-10-1	21	YNNPYNAGTN	BBBAAALBBB
W	heavy	Homo.sapiens	Hu_IGHV3-74*03	86.3	Hu_IGHV3-74*03	50.0	H3	11	H3-11-*	-1	SRPTMLPWFAY	BBBABAABBAB
W	heavy	Homo.sapiens	Hu_IGHV3-74*03	86.3	Hu_IGHV3-74*03	50.0	H4	8	H4-8-1	16	SDKSKNTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022