PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4MHJ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	80.0	L1	15	L1-15-*	-1	RASESVDNfgksFMH	BBABBABBLLBBBBB
E	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	75.0	L2	8	L2-8-*	-1	YRASNREf
E	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	100.0	L3	9	L3-9-cis7-1	15	QQSNEDPRT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	83.3	L4	6	L4-6-1	14	GSGTDF	EBEABB
F	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	92.3	H1	13	H1-13-1	12	KTSGYTFTEYTIH	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	70.0	H2	10	H2-10-1	14	GIFPNNGDTT	BBBAAALBBB
F	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	0.0	H3	13	H3-13-*	-1	VRNYGSSYGYFDV	BBBABEABBBBAB
F	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	75.0	H4	8	H4-8-1	10	VGRSSSTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	92.3	H1	13	H1-13-1	12	KTSGYTFTEYTIH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	70.0	H2	10	H2-10-1	14	GIFPNNGDTT	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	0.0	H3	13	H3-13-*	-1	VRNYGsSYGYFDV
H	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	75.0	H4	8	H4-8-1	10	VGRSSSTA	BBAAALBB
J	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	80.0	L1	15	L1-15-*	-1	RASESVDNfgksFMH	BBABBABBLLBBBBB
J	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	75.0	L2	8	L2-8-*	-1	YRASNREf
J	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	100.0	L3	9	L3-9-cis7-1	15	QQSNEDPRT	BBAABBbBB
J	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	83.3	L4	6	L4-6-1	14	GSGTDF	EBEABB
K	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	92.3	H1	13	H1-13-1	12	KTSGYTFTEYTIH	BBBLBBAAABBBB
K	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	70.0	H2	10	H2-10-1	14	GIFPNNGDTT	BBBAAALBBB
K	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	0.0	H3	13	H3-13-*	-1	VRNYGSSYGYFDV	BBBABEABBBBAB
K	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	75.0	H4	8	H4-8-1	10	VGRSSSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	80.0	L1	15	L1-15-*	-1	RASESVDNfgksFMH	BBABBABBLLBBBBB
L	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	75.0	L2	8	L2-8-*	-1	YRASNREf
L	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	100.0	L3	9	L3-9-cis7-1	15	QQSNEDPRT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	83.3	L4	6	L4-6-1	14	GSGTDF	EBEABB
Q	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	80.0	L1	15	L1-15-*	-1	RASESVDNfgksFMH	BBABBABBLLBBBBB
Q	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	75.0	L2	8	L2-8-*	-1	YRASNREf
Q	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	100.0	L3	9	L3-9-cis7-1	15	QQSNEDPRT	BBAABBbBB
Q	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	83.3	L4	6	L4-6-1	14	GSGTDF	EBEABB
R	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	92.3	H1	13	H1-13-1	12	KTSGYTFTEYTIH	BBBLBBAAABBBB
R	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	70.0	H2	10	H2-10-1	14	GIFPNNGDTT	BBBAAALBBB
R	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	0.0	H3	13	H3-13-*	-1	VRNYGsSYGYFDV
R	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	75.0	H4	8	H4-8-1	10	VGRSSSTA	BBAAALBB
T	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	92.3	H1	13	H1-13-1	12	KTSGYTFTEYTIH	BBBLBBAAABBBB
T	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	70.0	H2	10	H2-10-1	14	GIFPNNGDTT	BBBAAALBBB
T	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	0.0	H3	13	H3-13-*	-1	VRNYGSSYGYFDV	BBBABEABBBBAB
T	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	75.0	H4	8	H4-8-1	10	VGRSSSTA	BBAAALBB
V	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	80.0	L1	15	L1-15-*	-1	RASESVDNfgksFMH	BBABBABBLLBBBBB
V	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	75.0	L2	8	L2-8-*	-1	YRASNREf
V	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	100.0	L3	9	L3-9-cis7-1	16	QQSNEDPRT	BBAABBbBB
V	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	83.3	L4	6	L4-6-1	14	GSGTDF	EBEABB
W	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	92.3	H1	13	H1-13-1	12	KTSGYTFTEYTIH	BBBLBBAAABBBB
W	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	70.0	H2	10	H2-10-1	14	GIFPNNGDTT	BBBAAALBBB
W	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	0.0	H3	13	H3-13-*	-1	VRNYGSSYGYFDV	BBBABEABBBBAB
W	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	75.0	H4	8	H4-8-1	10	VGRSSSTA	BBAAALBB
X	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	80.0	L1	15	L1-15-*	-1	RASESVDNfgksFMH	BBABBABBLLBBBBB
X	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	75.0	L2	8	L2-8-*	-1	YRASNREf
X	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	100.0	L3	9	L3-9-cis7-1	15	QQSNEDPRT	BBAABBbBB
X	kappa	Mus.musculus	Mo_IGKV3-5*01	89.9	Mo_IGKV3-5*01	83.3	L4	6	L4-6-1	14	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022