PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4M1C

#CDRs = 8; #Clusters = 13.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Ca_IGHV1S29*01	69.2	H1	13	H1-13-1	18	AASGFNVSSYSIH	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Ca_IGHV1S29*01	50.0	H2	10	H2-10-1	18	SISSYYGSTS	BBBAAALBBB
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	100.0	H3	22	H3-22-*	-1	ARDRvmyywsfsKYGYPYGMDY
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	62.5	H4	8	H4-8-*	-1	ADTskNTA
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Ca_IGKV1-26*01	63.6	L1	11	L1-11-*	-1	rasqsvSSAVA
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Ca_IGKV1-26*01	62.5	L2	8	L2-8-*	-1	YSTSSLYS	ABABBBBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	10	L3-10-*	-1	QQSSpSFLIT	BBBBBLLBBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-*	-1	RsgtdF
E	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Ca_IGHV1S29*01	69.2	H1	13	H1-13-*	-1	AASGFNVSSYSIH	BBAABBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Ca_IGHV1S29*01	50.0	H2	10	H2-10-*	-1	SISSYYGSTS	BBBAAALBBB
E	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	100.0	H3	22	H3-22-*	-1	ARDRvmyywsfsKYGYPYGMDY
E	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	62.5	H4	8	H4-8-1	15	ADTSKNTA	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Ca_IGKV1-26*01	63.6	L1	11	L1-11-*	-1	RASqsvSSAVA
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Ca_IGKV1-26*01	62.5	L2	8	L2-8-1	27	YSTSSLYS	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	10	L3-10-*	-1	QQSSpSFLIT	BBBBBbLBBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	17	RSGTDF	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022