PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4LMQ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	89.0	Hu_IGHV3-23*04	46.2	H1	13	H1-13-1	14	AASGFSLTVYSVH	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	89.0	CDRLenMismatch	-1.0	H2	9	H2-9-*	-1	ALWGSGGTE	BBBAAbBBB
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	89.0	Hu_IGHV3-23*04	50.0	H3	14	H3-14-*	-1	ARDQGLNYGSLFDY	BBBALBAAEBBBAB
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	89.0	Hu_IGHV3-23*04	75.0	H4	8	H4-8-1	8	RDTSKNTV	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	89.0	Hu_IGHV3-23*04	46.2	H1	13	H1-13-1	13	AASGFSLTVYSVH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	89.0	CDRLenMismatch	-1.0	H2	9	H2-9-*	-1	ALWGSGGTE	BBBAAbBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	89.0	Hu_IGHV3-23*04	50.0	H3	14	H3-14-*	-1	ARDQGLNYGSLFDY	BBBALBAAEBBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	89.0	Hu_IGHV3-23*04	75.0	H4	8	H4-8-1	5	RDTSKNTV	BBAAALBB
I	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	63.6	L1	11	L1-11-1	7	RASESISYSLS	BBABBAEABBB
I	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	8	YNAVKLES	BLLABBBB
I	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	28.6	L3	9	L3-9-cis7-1	5	KQYWNTPFT	BBAABBbBB
I	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	83.3	L4	6	L4-6-1	11	GSGTDF	EBEABB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	63.6	L1	11	L1-11-1	8	RASESISYSLS	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	5	YNAVKLES	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	28.6	L3	9	L3-9-cis7-1	6	KQYWNTPFT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	83.3	L4	6	L4-6-1	6	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022