PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4LLW

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Mo_IGHV1-18*01	76.9	H1	13	H1-13-1	10	AASGFTFTDYTMD	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Mo_IGHV1-18*01	70.0	H2	10	H2-10-1	9	DVNPNSGGSI	BBBAAALBBB
A	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Hu_IGHV3-66*01	100.0	H3	12	H3-12-*	-1	ARNLGPSFYFDY	BBBABABBBBAB
A	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Hu_IGHV3-66*01	75.0	H4	8	H4-8-1	6	VDRSKNTL	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	81.8	L1	11	L1-11-1	6	KASQDVSIGVA	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	100.0	L2	8	L2-8-1	8	YSASYRYT	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	57.1	L3	9	L3-9-cis7-*	-1	QQYYIYPYT	BBAABBaLB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Mo_IGHV1-18*01	76.9	H1	13	H1-13-1	9	AASGFTFTDYTMD	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Mo_IGHV1-18*01	70.0	H2	10	H2-10-1	8	DVNPNSGGSI	BBBAAALBBB
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Hu_IGHV3-66*01	100.0	H3	12	H3-12-*	-1	ARNLGPSFYFDY	BBBBEABBBBAB
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Hu_IGHV3-66*01	75.0	H4	8	H4-8-1	9	VDRSKNTL	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	81.8	L1	11	L1-11-1	9	KASQDVSIGVA	BBABBAEABBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	100.0	L2	8	L2-8-1	5	YSASYRYT	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	57.1	L3	9	L3-9-cis7-1	11	QQYYIYPYT	BBAABBbBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022