PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4LLV

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-69*10	86.3	Hu_IGHV1-69*10	76.9	H1	13	H1-13-*	-1	KASGGSFSTYALS	BBBEEBBBBBBBB
A	heavy	Homo.sapiens	Hu_IGHV1-69*10	86.3	Hu_IGHV1-69*10	60.0	H2	10	H2-10-1	15	GVIPLLTITN	BBBAAALBBB
A	heavy	Homo.sapiens	Hu_IGHV1-69*10	86.3	Hu_IGHV1-69*10	100.0	H3	20	H3-20-*	-1	AREGTTGWGWlgkpigAFAH
A	heavy	Homo.sapiens	Hu_IGHV1-69*10	86.3	Hu_IGHV1-69*10	87.5	H4	8	H4-8-1	9	ADRSTSTA	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	66.7	L1	12	L1-12-2	4	RASQSVgNNKLA	BBABBBBLLBBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	75.0	L2	8	L2-8-1	11	YGASSRPS	BLEABBBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	71.4	L3	9	L3-9-2	8	QQYGQSLST	BBAABABBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV1-69*10	86.3	Hu_IGHV1-69*10	76.9	H1	13	H1-13-*	-1	KASGGSFSTYALS	BBBEEBBBBBBBB
C	heavy	Homo.sapiens	Hu_IGHV1-69*10	86.3	Hu_IGHV1-69*10	60.0	H2	10	H2-10-1	15	GVIPLLTITN	BBBAAALBBB
C	heavy	Homo.sapiens	Hu_IGHV1-69*10	86.3	Hu_IGHV1-69*10	100.0	H3	20	H3-20-*	-1	AREGTTGWGWlgkpigAFAH
C	heavy	Homo.sapiens	Hu_IGHV1-69*10	86.3	Hu_IGHV1-69*10	87.5	H4	8	H4-8-1	10	ADRSTSTA	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	66.7	L1	12	L1-12-2	10	RASQSVgNNKLA	BBABBBBLLBBB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	75.0	L2	8	L2-8-1	23	YGASSRPS	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	71.4	L3	9	L3-9-*	-1	QQYgqsLST
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV1-69*10	86.3	Hu_IGHV1-69*10	76.9	H1	13	H1-13-*	-1	KASggSFSTYALS
E	heavy	Homo.sapiens	Hu_IGHV1-69*10	86.3	Hu_IGHV1-69*10	60.0	H2	10	H2-10-1	15	GVIPLLTITN	BBBAAALBBB
E	heavy	Homo.sapiens	Hu_IGHV1-69*10	86.3	Hu_IGHV1-69*10	100.0	H3	20	H3-20-*	-1	AREGTTGWGWlgkpigAFAH
E	heavy	Homo.sapiens	Hu_IGHV1-69*10	86.3	Hu_IGHV1-69*10	87.5	H4	8	H4-8-1	8	ADRSTSTA	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	66.7	L1	12	L1-12-2	4	RASQSVgNNKLA	BBABBBBLLBBB
F	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	75.0	L2	8	L2-8-1	10	YGASSRPS	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	71.4	L3	9	L3-9-2	9	QQYGQSLST	BBAABABBB
F	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	100.0	L4	6	L4-6-*	-1	GsgTDF
H	heavy	Homo.sapiens	Hu_IGHV1-69*10	86.3	Hu_IGHV1-69*10	76.9	H1	13	H1-13-*	-1	KASGGSFSTYALS	BBBLELAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*10	86.3	Hu_IGHV1-69*10	60.0	H2	10	H2-10-1	13	GVIPLLTITN	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*10	86.3	Hu_IGHV1-69*10	100.0	H3	20	H3-20-*	-1	AREGTTGWGWlgkpigAFAH
H	heavy	Homo.sapiens	Hu_IGHV1-69*10	86.3	Hu_IGHV1-69*10	87.5	H4	8	H4-8-1	8	ADRSTSTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	66.7	L1	12	L1-12-2	4	RASQSVgNNKLA	BBABBBBLLBBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	75.0	L2	8	L2-8-1	10	YGASSRPS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	71.4	L3	9	L3-9-2	9	QQYGQSLST	BBAABABBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022