PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4KUC

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	CDRLenMismatch	-1.0	L1	10	L1-10-1	14	RASKSVSYMH	BBABBBABBB
D	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	87.5	L2	8	L2-8-1	12	YLGSNLES	BLLABBBB
D	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	71.4	L3	9	L3-9-cis7-1	16	QHKREYPPT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB
E	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	CDRLenMismatch	-1.0	L1	10	L1-10-1	19	RASKSVSYMH	BBABBBABBB
E	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	87.5	L2	8	L2-8-1	11	YLGSNLES	BLEABBBB
E	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	71.4	L3	9	L3-9-cis7-1	17	QHKREYPPT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	100.0	L4	6	L4-6-1	18	GSGTDF	EBEABB
F	heavy	Mus.musculus	Mo_IGHV1S68*01	85.2	Mo_IGHV1S68*01	100.0	H1	13	H1-13-1	10	KASGYTFTSYWIN	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV1S68*01	85.2	Mo_IGHV1S68*01	80.0	H2	10	H2-10-1	12	NIYPGSGRTN	BBBAAALBBB
F	heavy	Mus.musculus	Mo_IGHV1S68*01	85.2	Mo_IGHV1S68*01	0.0	H3	14	H3-14-*	-1	VRWVYGNFDSALDY	BBBBBEBLABAaBB
F	heavy	Mus.musculus	Mo_IGHV1S68*01	85.2	Mo_IGHV1S68*01	87.5	H4	8	H4-8-1	15	VDTSSSTV	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV1S68*01	85.2	Mo_IGHV1S68*01	100.0	H1	13	H1-13-1	19	KASGYTFTSYWIN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1S68*01	85.2	Mo_IGHV1S68*01	80.0	H2	10	H2-10-1	13	NIYPGSGRTN	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1S68*01	85.2	Mo_IGHV1S68*01	0.0	H3	14	H3-14-*	-1	VRWVYGNFDSALDY	BBBBBEAABAAABB
H	heavy	Mus.musculus	Mo_IGHV1S68*01	85.2	Mo_IGHV1S68*01	87.5	H4	8	H4-8-1	13	VDTSSSTV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022