PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4JZO

#CDRs = 8; #Clusters = 12.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-69*01	90.4	Hu_IGHV1-69*01	61.5	H1	13	H1-13-4	21	EASGGTLSNYVIT	BBBLBBABLBBBB
A	heavy	Homo.sapiens	Hu_IGHV1-69*01	90.4	Hu_IGHV1-69*01	60.0	H2	10	H2-10-1	17	GFIPTFRTAM	BBBAAALBBB
A	heavy	Homo.sapiens	Hu_IGHV1-69*01	90.4	Hu_IGHV1-69*01	100.0	H3	12	H3-12-3	18	ARGPLSRGYYDY	BBBBBLBABBAB
A	heavy	Homo.sapiens	Hu_IGHV1-69*01	90.4	Hu_IGHV1-69*01	87.5	H4	8	H4-8-1	10	ADESTSIA	BBAAALBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.5	Hu_IGLV3-1*01	90.9	L1	11	L1-11-4	18	SGDKLGDKYAS	BBAAAAABBBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.5	Hu_IGLV3-1*01	87.5	L2	8	L2-8-*	-1	YQDNKRPS	BLLABBBA
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.5	Hu_IGLV3-1*01	75.0	L3	9	L3-9-1	9	QAWDSNTGV	BBBBLLBBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.5	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	11	NSGNTA	BBEABB
C	heavy	Homo.sapiens	Hu_IGHV1-69*01	90.4	Hu_IGHV1-69*01	61.5	H1	13	H1-13-4	21	EASGGTLSNYVIT	BBBLBBABLBBBB
C	heavy	Homo.sapiens	Hu_IGHV1-69*01	90.4	Hu_IGHV1-69*01	60.0	H2	10	H2-10-1	17	GFIPTFRTAM	BBBAAALBBB
C	heavy	Homo.sapiens	Hu_IGHV1-69*01	90.4	Hu_IGHV1-69*01	100.0	H3	12	H3-12-3	18	ARGPLSRGYYDY	BBBBBLBABBAB
C	heavy	Homo.sapiens	Hu_IGHV1-69*01	90.4	Hu_IGHV1-69*01	87.5	H4	8	H4-8-1	10	ADESTSIA	BBAAALBB
D	heavy	Homo.sapiens	Hu_IGHV1-69*01	90.4	Hu_IGHV1-69*01	61.5	H1	13	H1-13-4	21	EASGGTLSNYVIT	BBBLBBABLBBBB
D	heavy	Homo.sapiens	Hu_IGHV1-69*01	90.4	Hu_IGHV1-69*01	60.0	H2	10	H2-10-1	17	GFIPTFRTAM	BBBAAALBBB
D	heavy	Homo.sapiens	Hu_IGHV1-69*01	90.4	Hu_IGHV1-69*01	100.0	H3	12	H3-12-*	-1	ARGPLSRGYYDY	BBBBBLALBBAB
D	heavy	Homo.sapiens	Hu_IGHV1-69*01	90.4	Hu_IGHV1-69*01	87.5	H4	8	H4-8-1	10	ADESTSIA	BBAAALBB
E	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.5	Hu_IGLV3-1*01	90.9	L1	11	L1-11-3	7	SGDKLGDKYAS	BBBLAAABBBB
E	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.5	Hu_IGLV3-1*01	87.5	L2	8	L2-8-*	-1	YQDNKRPS	BLLABBBA
E	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.5	Hu_IGLV3-1*01	75.0	L3	9	L3-9-1	9	QAWDSNTGV	BBBBLLBBB
E	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.5	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	11	NSGNTA	BBEABB
F	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.5	Hu_IGLV3-1*01	90.9	L1	11	L1-11-3	8	SGDKLGDKYAS	BBBLAAABBBB
F	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.5	Hu_IGLV3-1*01	87.5	L2	8	L2-8-*	-1	YQDNKRPS	BLLABBBA
F	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.5	Hu_IGLV3-1*01	75.0	L3	9	L3-9-1	9	QAWDSNTGV	BBBBLLBBB
F	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.5	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	11	NSGNTA	BBEABB
G	heavy	Homo.sapiens	Hu_IGHV1-69*01	90.4	Hu_IGHV1-69*01	61.5	H1	13	H1-13-*	-1	EASGGTLSNYVIT	BBBLBALBLBBBB
G	heavy	Homo.sapiens	Hu_IGHV1-69*01	90.4	Hu_IGHV1-69*01	60.0	H2	10	H2-10-1	16	GFIPTFRTAM	BBBAAALBBB
G	heavy	Homo.sapiens	Hu_IGHV1-69*01	90.4	Hu_IGHV1-69*01	100.0	H3	12	H3-12-3	16	ARGPLSRGYYDY	BBBBBLBABBAB
G	heavy	Homo.sapiens	Hu_IGHV1-69*01	90.4	Hu_IGHV1-69*01	87.5	H4	8	H4-8-*	-1	ADEStSIA
H	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.5	Hu_IGLV3-1*01	90.9	L1	11	L1-11-3	7	SGDKLGDKYAS	BBBLAAABBBB
H	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.5	Hu_IGLV3-1*01	87.5	L2	8	L2-8-*	-1	YQDNKRPS	BLLABBBA
H	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.5	Hu_IGLV3-1*01	75.0	L3	9	L3-9-1	9	QAWDSNTGV	BBBBLLBBB
H	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.5	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	11	NSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022