PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4JVP

#CDRs = 4; #Clusters = 5.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Vicugna.pacos	Al_IGHV3S61*01_VHH	91.8	Al_IGHV3S61*01_VHH	84.6	H1	13	H1-13-*	-1	TASGFTDDYYAIG	BBBLBABAABBBE
A	heavy	Vicugna.pacos	Al_IGHV3S61*01_VHH	91.8	Al_IGHV3S61*01_VHH	60.0	H2	10	H2-10-6	10	CITNFDGGTY	BBBABLLBBB
A	heavy	Vicugna.pacos	Al_IGHV3S61*01_VHH	91.8	Al_IGHV3S61*01_VHH	0.0	H3	20	H3-20-*	-1	AADKGlcswlrAGGKVTFGS
A	heavy	Vicugna.pacos	Al_IGHV3S61*01_VHH	91.8	Al_IGHV3S61*01_VHH	100.0	H4	8	H4-8-*	-1	RDNaKNTV
B	heavy	Vicugna.pacos	Al_IGHV3S61*01_VHH	91.8	Al_IGHV3S61*01_VHH	84.6	H1	13	H1-13-*	-1	TAsGFTDDYYAIG
B	heavy	Vicugna.pacos	Al_IGHV3S61*01_VHH	91.8	Al_IGHV3S61*01_VHH	60.0	H2	10	H2-10-6	10	CITNFDGGTY	BBBABLLBBB
B	heavy	Vicugna.pacos	Al_IGHV3S61*01_VHH	91.8	Al_IGHV3S61*01_VHH	0.0	H3	20	H3-20-*	-1	AADKGlcswlrAggKVTFGS
B	heavy	Vicugna.pacos	Al_IGHV3S61*01_VHH	91.8	Al_IGHV3S61*01_VHH	100.0	H4	8	H4-8-1	8	RDNAKNTV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022