PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4JRE

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	heavy	Mus.musculus	Mo_IGHV9-3-1*01	79.5	Mo_IGHV9-3-1*01	84.6	H1	13	H1-13-1	9	KASGYSFTDYGMN	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV9-3-1*01	79.5	Mo_IGHV9-3-1*01	60.0	H2	10	H2-10-1	21	WINTSNGYTT	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV9-3-1*01	79.5	Mo_IGHV9-3-1*01	100.0	H3	11	H3-11-*	-1	ARSWYNRAMDY	BBEAAABBLAB
B	heavy	Mus.musculus	Mo_IGHV9-3-1*01	79.5	Mo_IGHV9-3-1*01	62.5	H4	8	H4-8-1	14	VDNSASTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV19-93*01	82.6	Mo_IGKV19-93*01	54.5	L1	11	L1-11-2	7	QASQNITNYIV	BBABBALLBBB
C	kappa	Mus.musculus	Mo_IGKV19-93*01	82.6	Mo_IGKV19-93*01	62.5	L2	8	L2-8-1	10	YYTSTLES	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV19-93*01	82.6	Mo_IGKV19-93*01	71.4	L3	8	L3-8-1	12	LQYNSLLT	BBAABEBB
C	kappa	Mus.musculus	Mo_IGKV19-93*01	82.6	Mo_IGKV19-93*01	100.0	L4	6	L4-6-1	13	GSGRDY	EBEABB
H	heavy	Mus.musculus	Mo_IGHV9-3-1*01	79.5	Mo_IGHV9-3-1*01	84.6	H1	13	H1-13-1	11	KASGYSFTDYGMN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV9-3-1*01	79.5	Mo_IGHV9-3-1*01	60.0	H2	10	H2-10-1	15	WINTSNGYTT	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV9-3-1*01	79.5	Mo_IGHV9-3-1*01	100.0	H3	11	H3-11-*	-1	ARSWYNRAMDY	BBEAAABBLAB
H	heavy	Mus.musculus	Mo_IGHV9-3-1*01	79.5	Mo_IGHV9-3-1*01	62.5	H4	8	H4-8-1	12	VDNSASTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV19-93*01	82.6	Mo_IGKV19-93*01	54.5	L1	11	L1-11-2	5	QASQNITNYIV	BBABBALLBBB
L	kappa	Mus.musculus	Mo_IGKV19-93*01	82.6	Mo_IGKV19-93*01	62.5	L2	8	L2-8-1	7	YYTSTLES	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV19-93*01	82.6	Mo_IGKV19-93*01	71.4	L3	8	L3-8-1	15	LQYNSLLT	BBAABEBB
L	kappa	Mus.musculus	Mo_IGKV19-93*01	82.6	Mo_IGKV19-93*01	100.0	L4	6	L4-6-1	12	GSGRDY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022