PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4JFY

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	97.1	Mo_IGKV17-121*01	90.9	L1	11	L1-11-2	11	MTSTDIDDDMN	BBABBALLBBB
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	97.1	Mo_IGKV17-121*01	100.0	L2	8	L2-8-*	-1	SEGNTLRP	BBLLBBBB
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	97.1	Hu_IGKV3-11*01	42.9	L3	9	L3-9-cis7-1	8	LQSFNVPLT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	97.1	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-66*01	97.3	Mo_IGHV5S4*01	69.2	H1	13	H1-13-1	9	VTSGFTFRKFGMS	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-66*01	97.3	Mo_IGHV5S4*01	50.0	H2	10	H2-10-*	-1	SIVTGGRKTY	BBBABAABBB
B	heavy	Homo.sapiens	Hu_IGHV3-66*01	97.3	Hu_IGHV3-66*01	50.0	H3	13	H3-13-2	16	TRGYSSTSYAMDY	BBBABAABABBAB
B	heavy	Homo.sapiens	Hu_IGHV3-66*01	97.3	Hu_IGHV3-66*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	97.3	Mo_IGHV5S4*01	69.2	H1	13	H1-13-1	10	VTSGFTFRKFGMS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	97.3	Mo_IGHV5S4*01	50.0	H2	10	H2-10-2	14	SIVTGGRKTY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	97.3	Hu_IGHV3-66*01	50.0	H3	13	H3-13-2	16	TRGYSSTSYAMDY	BBBABAABABBAB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	97.3	Hu_IGHV3-66*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	97.1	Mo_IGKV17-121*01	90.9	L1	11	L1-11-2	11	MTSTDIDDDMN	BBABBALLBBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	97.1	Mo_IGKV17-121*01	100.0	L2	8	L2-8-*	-1	SEGNTLRP	BBLLBBBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	97.1	Hu_IGKV3-11*01	42.9	L3	9	L3-9-cis7-1	8	LQSFNVPLT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	97.1	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022