PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4HFW

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV1-OR2-108*01	91.3	Hu_IGKV1-OR2-108*01	72.7	L1	11	L1-11-1	15	RASQSISNYLN	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV1-OR2-108*01	91.3	Hu_IGKV1-OR2-108*01	87.5	L2	8	L2-8-1	6	YAATSLQS	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV1-OR2-108*01	91.3	Hu_IGKV1-OR2-108*01	14.3	L3	8	L3-8-*	-1	QKTLRTWT	BBABEBBB
A	kappa	Homo.sapiens	Hu_IGKV1-OR2-108*01	91.3	Hu_IGKV1-OR2-108*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV1-46*01	87.3	Hu_IGHV1-46*01	84.6	H1	13	H1-13-1	8	KASGYSFTSYYVH	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV1-46*01	87.3	Hu_IGHV1-46*01	70.0	H2	10	H2-10-1	10	MINPSDGSTY	BBBAAALBBB
B	heavy	Homo.sapiens	Hu_IGHV1-46*01	87.3	Hu_IGHV1-46*01	100.0	H3	13	H3-13-*	-1	ARGVVGATNEIDF	BBBBBEABBBBAB
B	heavy	Homo.sapiens	Hu_IGHV1-46*01	87.3	Hu_IGHV1-46*01	87.5	H4	8	H4-8-1	5	RDTSTTTV	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV1-46*01	87.3	Hu_IGHV1-46*01	84.6	H1	13	H1-13-1	8	KASGYSFTSYYVH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-46*01	87.3	Hu_IGHV1-46*01	70.0	H2	10	H2-10-1	10	MINPSDGSTY	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-46*01	87.3	Hu_IGHV1-46*01	100.0	H3	13	H3-13-*	-1	ARGVVGATNEIDF	BBBBBEABBBBAB
H	heavy	Homo.sapiens	Hu_IGHV1-46*01	87.3	Hu_IGHV1-46*01	87.5	H4	8	H4-8-1	5	RDTSTTTV	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-OR2-108*01	91.3	Hu_IGKV1-OR2-108*01	72.7	L1	11	L1-11-1	15	RASQSISNYLN	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-OR2-108*01	91.3	Hu_IGKV1-OR2-108*01	87.5	L2	8	L2-8-1	6	YAATSLQS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-OR2-108*01	91.3	Hu_IGKV1-OR2-108*01	14.3	L3	8	L3-8-*	-1	QKTLRTWT	BBABEBBB
L	kappa	Homo.sapiens	Hu_IGKV1-OR2-108*01	91.3	Hu_IGKV1-OR2-108*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022