PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4GXU

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
M	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	100.0	H1	13	H1-13-1	6	AASGFTFSSYAMH	BBBLBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	90.0	H2	10	H2-10-2	6	VISYDGRNKY	BBBAALABBB
M	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	100.0	H3	14	H3-14-*	-1	ARELLMDYYDHIGY
M	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
N	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	92.3	L1	13	L1-13-1	10	SGSSSNIGSYTVN	BBBAAAAAABBBB
N	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	87.5	L2	8	L2-8-1	10	YSLNQRPS	BLLABBBB
N	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	77.8	L3	12	L3-12-*	-1	AAWDDSLSaHVV
N	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	100.0	L4	6	L4-6-2	9	KSGTSA	BBEABB
O	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	100.0	H1	13	H1-13-1	7	AASGFTFSSYAMH	BBBLBBAAABBBB
O	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	90.0	H2	10	H2-10-2	6	VISYDGRNKY	BBBAALABBB
O	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	100.0	H3	14	H3-14-*	-1	ARELLMDYYDHIGY
O	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
P	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	92.3	L1	13	L1-13-1	10	SGSSSNIGSYTVN	BBBAAAAAABBBB
P	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	87.5	L2	8	L2-8-1	10	YSLNQRPS	BLLABBBB
P	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	77.8	L3	12	L3-12-*	-1	AAWDDSLSaHVV
P	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	100.0	L4	6	L4-6-2	9	KSGTSA	BBEABB
Q	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	100.0	H1	13	H1-13-1	7	AASGFTFSSYAMH	BBBLBBAAABBBB
Q	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	90.0	H2	10	H2-10-2	6	VISYDGRNKY	BBBAALABBB
Q	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	100.0	H3	14	H3-14-*	-1	ARELLMDYYDHIGY
Q	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
R	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	92.3	L1	13	L1-13-1	10	SGSSSNIGSYTVN	BBBAAAAAABBBB
R	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	87.5	L2	8	L2-8-1	10	YSLNQRPS	BLLABBBB
R	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	77.8	L3	12	L3-12-*	-1	AAWDDSLSaHVV
R	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	100.0	L4	6	L4-6-2	9	KSGTSA	BBEABB
S	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	100.0	H1	13	H1-13-1	6	AASGFTFSSYAMH	BBBLBBAAABBBB
S	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	90.0	H2	10	H2-10-2	6	VISYDGRNKY	BBBAALABBB
S	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	100.0	H3	14	H3-14-*	-1	ARELLMDYYDHIGY
S	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
T	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	92.3	L1	13	L1-13-1	10	SGSSSNIGSYTVN	BBBAAAAAABBBB
T	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	87.5	L2	8	L2-8-1	10	YSLNQRPS	BLLABBBB
T	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	77.8	L3	12	L3-12-*	-1	AAWDDSLSaHVV
T	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	100.0	L4	6	L4-6-2	9	KSGTSA	BBEABB
U	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	100.0	H1	13	H1-13-1	6	AASGFTFSSYAMH	BBBLBBAAABBBB
U	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	90.0	H2	10	H2-10-2	6	VISYDGRNKY	BBBAALABBB
U	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	100.0	H3	14	H3-14-*	-1	ARELLMDYYDHIGY
U	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
V	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	92.3	L1	13	L1-13-1	10	SGSSSNIGSYTVN	BBBAAAAAABBBB
V	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	87.5	L2	8	L2-8-1	10	YSLNQRPS	BLLABBBB
V	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	77.8	L3	12	L3-12-*	-1	AAWDDSLSaHVV
V	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	100.0	L4	6	L4-6-2	9	KSGTSA	BBEABB
W	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	100.0	H1	13	H1-13-1	6	AASGFTFSSYAMH	BBBLBBAAABBBB
W	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	90.0	H2	10	H2-10-2	6	VISYDGRNKY	BBBAALABBB
W	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	100.0	H3	14	H3-14-*	-1	ARELLMDYYDHIGY
W	heavy	Homo.sapiens	Hu_IGHV3-30*01	94.5	Hu_IGHV3-30*01	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
X	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	92.3	L1	13	L1-13-1	10	SGSSSNIGSYTVN	BBBAAAAAABBBB
X	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	87.5	L2	8	L2-8-1	10	YSLNQRPS	BLLABBBB
X	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	77.8	L3	12	L3-12-*	-1	AAWDDSLSaHVV
X	lambda	Homo.sapiens	Hu_IGLV1-44*01	95.6	Hu_IGLV1-44*01	100.0	L4	6	L4-6-2	9	KSGTSA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022