PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4GW4

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-2*07	62.3	Hu_IGHV1-2*07	38.5	H1	13	H1-13-1	11	EASGYKISDHFIH	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV1-2*07	62.3	Hu_IGHV1-2*07	60.0	H2	10	H2-10-1	12	WINPKTGQPN	BBBAAALBBB
A	heavy	Homo.sapiens	Hu_IGHV1-2*07	62.3	Hu_IGHV1-2*07	100.0	H3	12	H3-12-*	-1	ARQRSDFWDFDV	BBBABAALBBAB
A	heavy	Homo.sapiens	Hu_IGHV1-2*07	62.3	Hu_IGHV1-2*07	0.0	H4	12	H4-12-*	-1	RQASwdfdTYSF
B	kappa	Homo.sapiens	Hu_IGKV1-17*02	78.3	None	0.0	L1	7	L1-7-*	-1	QANGYLN
B	kappa	Homo.sapiens	Hu_IGKV1-17*02	78.3	None	37.5	L2	8	L2-8-1	8	YDGSKLER	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-17*02	78.3	Hu_IGKV1-17*02	0.0	L3	5	L3-5-1	7	QVYEF	BBEAB
B	kappa	Homo.sapiens	Hu_IGKV1-17*02	78.3	Hu_IGKV1-17*02	33.3	L4	6	L4-6-2	30	RWGQEY	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-2*07	62.3	Hu_IGHV1-2*07	38.5	H1	13	H1-13-1	11	EASGYKISDHFIH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-2*07	62.3	Hu_IGHV1-2*07	60.0	H2	10	H2-10-1	12	WINPKTGQPN	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-2*07	62.3	Hu_IGHV1-2*07	100.0	H3	12	H3-12-*	-1	ARQRSDFWDFDV	BBBABAALBBAB
H	heavy	Homo.sapiens	Hu_IGHV1-2*07	62.3	Hu_IGHV1-2*07	0.0	H4	12	H4-12-*	-1	RQASwdfdTYSF
L	kappa	Homo.sapiens	Hu_IGKV1-17*02	78.3	None	0.0	L1	7	L1-7-*	-1	QANGYLN
L	kappa	Homo.sapiens	Hu_IGKV1-17*02	78.3	None	37.5	L2	8	L2-8-1	8	YDGSKLER	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-17*02	78.3	Hu_IGKV1-17*02	0.0	L3	5	L3-5-1	7	QVYEF	BBEAB
L	kappa	Homo.sapiens	Hu_IGKV1-17*02	78.3	Hu_IGKV1-17*02	33.3	L4	6	L4-6-2	31	RWGQEY	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022