PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4GSD

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV4-4*02	95.9	Hu_IGHV4-4*02	92.9	H1	14	H1-14-2	11	AVSGGSISsSYWWS	BBBLBBAABBBBBB
H	heavy	Homo.sapiens	Hu_IGHV4-4*02	95.9	Hu_IGHV4-4*02	88.9	H2	9	H2-9-1	12	EIYHSGNTN	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-4*02	95.9	Hu_IGHV4-4*02	100.0	H3	16	H3-16-*	-1	ARVALFDilTGGWFDP
H	heavy	Homo.sapiens	Hu_IGHV4-4*02	95.9	Hu_IGHV4-4*02	87.5	H4	8	H4-8-1	14	VDKSKNLF	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	94.0	Hu_IGLV3-1*01	81.8	L1	11	L1-11-3	9	SGDTLGDKYVC	BBBLAAABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	94.0	Hu_IGLV3-1*01	87.5	L2	8	L2-8-1	7	YQDTKRPS	BLLABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	94.0	Hu_IGLV3-1*01	75.0	L3	9	L3-9-3	13	QAWDSSSFV	BBBBAABBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	94.0	Hu_IGLV3-1*01	83.3	L4	6	L4-6-2	12	NSGDTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022