PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4GQP

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV3S1*01	93.2	Mo_IGHV3S1*01	76.9	H1	13	H1-13-*	-1	SVTGDSVTSGYWS	BBBEBBBABEBBB
H	heavy	Mus.musculus	Mo_IGHV3S1*01	93.2	Mo_IGHV3S1*01	88.9	H2	9	H2-9-1	11	YISYRGSTY	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV3S1*01	93.2	Mo_IGHV3S1*01	0.0	H3	12	H3-12-*	-1	TYFDSDDYAMEY	BBBBAABAABBB
H	heavy	Mus.musculus	Mo_IGHV3S1*01	93.2	Mo_IGHV3S1*01	87.5	H4	8	H4-8-1	9	RDTSKNQV	BBAAALBB
H	kappa	Mus.musculus	Mo_IGKV4-79*01	100.0	Mo_IGKV4-79*01	91.7	L1	12	L1-12-1	7	SASSSVSsSHLY	BBABBBBAAABB
H	kappa	Mus.musculus	Mo_IGKV4-79*01	100.0	Mo_IGKV4-79*01	100.0	L2	8	L2-8-1	5	YSTSNLAS	BLLABBBB
H	kappa	Mus.musculus	Mo_IGKV4-79*01	100.0	Mo_IGKV4-79*01	75.0	L3	9	L3-9-cis7-1	10	HQWSSFPFT	BBAABBbBB
H	kappa	Mus.musculus	Mo_IGKV4-79*01	100.0	Mo_IGKV4-79*01	100.0	L4	6	L4-6-1	10	GSGTSY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022