PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4GMT

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV1-9*01	87.7	Mo_IGHV1-9*01	84.6	H1	13	H1-13-1	13	KATGYTFSSYWIE	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-9*01	87.7	Mo_IGHV1-9*01	70.0	H2	10	H2-10-1	10	EILPEIGMTN	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-9*01	87.7	Mo_IGHV1-9*01	100.0	H3	11	H3-11-*	-1	ARPYDYSWFAY	BBBAAAABBAB
H	heavy	Mus.musculus	Mo_IGHV1-9*01	87.7	Mo_IGHV1-9*01	75.0	H4	8	H4-8-1	10	ANTSSNTV	BBAAALBB
I	heavy	Mus.musculus	Mo_IGHV1-9*01	87.7	Mo_IGHV1-9*01	84.6	H1	13	H1-13-1	12	KATGYTFSSYWIE	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV1-9*01	87.7	Mo_IGHV1-9*01	70.0	H2	10	H2-10-1	9	EILPEIGMTN	BBBAAALBBB
I	heavy	Mus.musculus	Mo_IGHV1-9*01	87.7	Mo_IGHV1-9*01	100.0	H3	11	H3-11-*	-1	ARPYDYSWFAY	BBBAAAABBAB
I	heavy	Mus.musculus	Mo_IGHV1-9*01	87.7	Mo_IGHV1-9*01	75.0	H4	8	H4-8-1	5	ANTSSNTV	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV6-15*01	94.2	Mo_IGKV6-15*01	90.9	L1	11	L1-11-1	12	KASQNVDTNVA	BBABBAEABBB
L	kappa	Mus.musculus	Mo_IGKV6-15*01	94.2	Mo_IGKV6-15*01	87.5	L2	8	L2-8-1	9	YSASNRYS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV6-15*01	94.2	Mo_IGKV6-15*01	100.0	L3	9	L3-9-cis7-1	9	QQYNSYPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV6-15*01	94.2	Mo_IGKV6-15*01	83.3	L4	6	L4-6-2	10	ASGTDF	BBEABB
M	kappa	Mus.musculus	Mo_IGKV6-15*01	94.2	Mo_IGKV6-15*01	90.9	L1	11	L1-11-1	11	KASQNVDTNVA	BBABBAEABBB
M	kappa	Mus.musculus	Mo_IGKV6-15*01	94.2	Mo_IGKV6-15*01	87.5	L2	8	L2-8-1	13	YSASNRYS	BLLABBBB
M	kappa	Mus.musculus	Mo_IGKV6-15*01	94.2	Mo_IGKV6-15*01	100.0	L3	9	L3-9-cis7-1	10	QQYNSYPYT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV6-15*01	94.2	Mo_IGKV6-15*01	83.3	L4	6	L4-6-2	7	ASGTDF	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022