PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4GAY

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV3-8*02	97.3	Mo_IGHV3-8*02	100.0	H1	13	H1-13-*	-1	SVTGDSITsgYWN
A	heavy	Mus.musculus	Mo_IGHV3-8*02	97.3	Mo_IGHV3-8*02	100.0	H2	9	H2-9-1	14	YISYSGSTY	BBBAALBBB
A	heavy	Mus.musculus	Mo_IGHV3-8*02	97.3	Mo_IGHV3-8*02	50.0	H3	12	H3-12-1	15	ALITTTTYAMDY	BBBBAAALBBAB
A	heavy	Mus.musculus	Mo_IGHV3-8*02	97.3	Mo_IGHV3-8*02	100.0	H4	8	H4-8-1	22	RDTSKNQY	BBAAALEB
B	kappa	Mus.musculus	Mo_IGKV3-10*01	97.1	Mo_IGKV3-10*01	86.7	L1	15	L1-15-1	7	RASESVdgygNSFLH	BBABBABBLLBBBBB
B	kappa	Mus.musculus	Mo_IGKV3-10*01	97.1	Mo_IGKV3-10*01	87.5	L2	8	L2-8-1	14	YLASNLNS	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV3-10*01	97.1	Mo_IGKV3-10*01	85.7	L3	9	L3-9-cis7-1	19	QQNNVDPWT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV3-10*01	97.1	Mo_IGKV3-10*01	100.0	L4	6	L4-6-3	22	GSRTDF	EBAABB
H	heavy	Mus.musculus	Mo_IGHV3-8*02	97.3	Mo_IGHV3-8*02	100.0	H1	13	H1-13-*	-1	SVTGDSITSGYWN	BBBLEBAABEBBB
H	heavy	Mus.musculus	Mo_IGHV3-8*02	97.3	Mo_IGHV3-8*02	100.0	H2	9	H2-9-1	10	YISYSGSTY	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV3-8*02	97.3	Mo_IGHV3-8*02	50.0	H3	12	H3-12-1	13	ALITTTTYAMDY	BBBBAAALBBAB
H	heavy	Mus.musculus	Mo_IGHV3-8*02	97.3	Mo_IGHV3-8*02	100.0	H4	8	H4-8-1	16	RDTSKNQY	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV3-10*01	97.1	Mo_IGKV3-10*01	86.7	L1	15	L1-15-1	15	RASESVdgygNSFLH	BBABBABBLLBBBBB
L	kappa	Mus.musculus	Mo_IGKV3-10*01	97.1	Mo_IGKV3-10*01	87.5	L2	8	L2-8-1	9	YLASNLNS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV3-10*01	97.1	Mo_IGKV3-10*01	85.7	L3	9	L3-9-cis7-1	18	QQNNVDPWT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV3-10*01	97.1	Mo_IGKV3-10*01	100.0	L4	6	L4-6-3	29	GSRTDF	EAAABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022