PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4FQR

#CDRs = 4; #Clusters = 4.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
a	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	CDRLenMismatch	-1.0	H1	18	H1-18-*	-1	VGSGSSFgestlSYYAVS
a	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	30.0	H2	10	H2-10-*	-1	IINAGGGDID	BBBAALBLBB
a	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	100.0	H3	26	H3-26-*	-1	AKHMSMQQVvsagweradlvgDAFDV
a	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	87.5	H4	8	H4-8-1	5	RDNSKETL	BBAAALBB
c	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	CDRLenMismatch	-1.0	H1	18	H1-18-*	-1	VGSGSSFgestlSYYAVS
c	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	30.0	H2	10	H2-10-*	-1	IINAGGGDID	BBBAALBLBB
c	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	100.0	H3	26	H3-26-*	-1	AKHMSMQQVvsagweradlvgDAFDV
c	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	87.5	H4	8	H4-8-1	5	RDNSKETL	BBAAALBB
e	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	CDRLenMismatch	-1.0	H1	18	H1-18-*	-1	VGSGSSFgestlSYYAVS
e	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	30.0	H2	10	H2-10-*	-1	IINAGGGDID	BBBAALBLBB
e	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	100.0	H3	26	H3-26-*	-1	AKHMSMQQVvsagweradlvgDAFDV
e	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	87.5	H4	8	H4-8-1	5	RDNSKETL	BBAAALBB
g	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	CDRLenMismatch	-1.0	H1	18	H1-18-*	-1	VGSGSSFgestlSYYAVS
g	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	30.0	H2	10	H2-10-*	-1	IINAGGGDID	BBBAALBLBB
g	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	100.0	H3	26	H3-26-*	-1	AKHMSMQQVvsagweradlvgDAFDV
g	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	87.5	H4	8	H4-8-1	5	RDNSKETL	BBAAALBB
i	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	CDRLenMismatch	-1.0	H1	18	H1-18-*	-1	VGSGSSFgestlSYYAVS
i	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	30.0	H2	10	H2-10-*	-1	IINAGGGDID	BBBAALBLBB
i	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	100.0	H3	26	H3-26-*	-1	AKHMSMQQVvsagweradlvgDAFDV
i	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	87.5	H4	8	H4-8-1	5	RDNSKETL	BBAAALBB
k	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	CDRLenMismatch	-1.0	H1	18	H1-18-*	-1	VGSGSSFgestlSYYAVS
k	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	30.0	H2	10	H2-10-*	-1	IINAGGGDID	BBBAALBLBB
k	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	100.0	H3	26	H3-26-*	-1	AKHMSMQQVvsagweradlvgDAFDV
k	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	87.5	H4	8	H4-8-1	5	RDNSKETL	BBAAALBB
m	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	CDRLenMismatch	-1.0	H1	18	H1-18-*	-1	VGSGSSFgestlSYYAVS
m	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	30.0	H2	10	H2-10-*	-1	IINAGGGDID	BBBAALBLBB
m	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	100.0	H3	26	H3-26-*	-1	AKHMSMQQVvsagweradlvgDAFDV
m	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	87.5	H4	8	H4-8-1	5	RDNSKETL	BBAAALBB
o	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	CDRLenMismatch	-1.0	H1	18	H1-18-*	-1	VGSGSSFgestlSYYAVS
o	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	30.0	H2	10	H2-10-*	-1	IINAGGGDID	BBBAALBLBB
o	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	100.0	H3	26	H3-26-*	-1	AKHMSMQQVvsagweradlvgDAFDV
o	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	87.5	H4	8	H4-8-1	5	RDNSKETL	BBAAALBB
q	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	CDRLenMismatch	-1.0	H1	18	H1-18-*	-1	VGSGSSFgestlSYYAVS
q	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	30.0	H2	10	H2-10-*	-1	IINAGGGDID	BBBAALBLBB
q	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	100.0	H3	26	H3-26-*	-1	AKHMSMQQVvsagweradlvgDAFDV
q	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	87.5	H4	8	H4-8-1	5	RDNSKETL	BBAAALBB
s	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	CDRLenMismatch	-1.0	H1	18	H1-18-*	-1	VGSGSSFgestlSYYAVS
s	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	30.0	H2	10	H2-10-*	-1	IINAGGGDID	BBBAALBLBB
s	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	100.0	H3	26	H3-26-*	-1	AKHMSMQQVvsagweradlvgDAFDV
s	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	87.5	H4	8	H4-8-1	5	RDNSKETL	BBAAALBB
u	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	CDRLenMismatch	-1.0	H1	18	H1-18-*	-1	VGSGSSFgestlSYYAVS
u	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	30.0	H2	10	H2-10-*	-1	IINAGGGDID	BBBAALBLBB
u	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	100.0	H3	26	H3-26-*	-1	AKHMSMQQVvsagweradlvgDAFDV
u	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	87.5	H4	8	H4-8-1	5	RDNSKETL	BBAAALBB
w	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	CDRLenMismatch	-1.0	H1	18	H1-18-*	-1	VGSGSSFgestlSYYAVS
w	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	30.0	H2	10	H2-10-*	-1	IINAGGGDID	BBBAALBLBB
w	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	100.0	H3	26	H3-26-*	-1	AKHMSMQQVvsagweradlvgDAFDV
w	heavy	Homo.sapiens	Hu_IGHV3-23*04	86.3	Hu_IGHV3-23*04	87.5	H4	8	H4-8-1	5	RDNSKETL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022