PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4FFW

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Mus.musculus	Mo_IGKV4-72*01	92.8	Mo_IGKV4-72*01	80.0	L1	10	L1-10-*	-1	RASSSVNNMH	BBAABBABBB
C	kappa	Mus.musculus	Mo_IGKV4-72*01	92.8	Mo_IGKV4-72*01	75.0	L2	8	L2-8-1	22	HGTSNLAS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV4-72*01	92.8	Mo_IGKV4-72*01	75.0	L3	9	L3-9-cis7-1	13	QQWSNHPPT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV4-72*01	92.8	Mo_IGKV4-72*01	83.3	L4	6	L4-6-1	24	GSGTSF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1-39*01	95.8	Mo_IGHV1-39*01	92.3	H1	13	H1-13-*	-1	KASGYSFTDYNIN	BBBEBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-39*01	95.8	Mo_IGHV1-39*01	60.0	H2	10	H2-10-1	10	VVIPKYGTTN	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1-39*01	95.8	Mo_IGHV1-39*01	50.0	H3	10	H3-10-*	-1	TRFRDVFFDV	BBBALABBAB
D	heavy	Mus.musculus	Mo_IGHV1-39*01	95.8	Mo_IGHV1-39*01	100.0	H4	8	H4-8-1	11	VDQSSSTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV1-39*01	95.8	Mo_IGHV1-39*01	92.3	H1	13	H1-13-1	22	KASGYSFTDYNIN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-39*01	95.8	Mo_IGHV1-39*01	60.0	H2	10	H2-10-1	9	VVIPKYGTTN	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-39*01	95.8	Mo_IGHV1-39*01	50.0	H3	10	H3-10-*	-1	TRFRDVFFDV	BBBALABBAB
H	heavy	Mus.musculus	Mo_IGHV1-39*01	95.8	Mo_IGHV1-39*01	100.0	H4	8	H4-8-1	10	VDQSSSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV4-72*01	92.8	Mo_IGKV4-72*01	80.0	L1	10	L1-10-*	-1	RASSSVNNMH	BBAABBABBB
L	kappa	Mus.musculus	Mo_IGKV4-72*01	92.8	Mo_IGKV4-72*01	75.0	L2	8	L2-8-1	15	HGTSNLAS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV4-72*01	92.8	Mo_IGKV4-72*01	75.0	L3	9	L3-9-cis7-1	14	QQWSNHPPT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV4-72*01	92.8	Mo_IGKV4-72*01	83.3	L4	6	L4-6-1	20	GSGTSF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022