PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4F9P

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Mus.musculus	Mo_IGHV1-54*03	91.8	Mo_IGHV1-54*03	84.6	H1	13	H1-13-1	16	KASGYAFTSYLIH	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV1-54*03	91.8	Mo_IGHV1-54*03	60.0	H2	10	H2-10-3	23	VINPRSGDSH	BBBBLALBBB
C	heavy	Mus.musculus	Mo_IGHV1-54*03	91.8	Mo_IGHV1-54*03	100.0	H3	8	H3-8-*	-1	ARSDYGAY	BBbLAAaB
C	heavy	Mus.musculus	Mo_IGHV1-54*03	91.8	Mo_IGHV1-54*03	87.5	H4	8	H4-8-1	10	ADQSSSTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV5-43*01	94.2	Mo_IGKV5-43*01	100.0	L1	11	L1-11-1	21	RASQSISNNLH	BBABBAEABBB
C	kappa	Mus.musculus	Mo_IGKV5-43*01	94.2	Mo_IGKV5-43*01	87.5	L2	8	L2-8-1	25	KYASQSIF	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV5-43*01	94.2	Mo_IGKV5-43*01	100.0	L3	9	L3-9-cis7-1	19	QQSNSWPHT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV5-43*01	94.2	Mo_IGKV5-43*01	83.3	L4	6	L4-6-1	19	GSGTEF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1-54*03	91.8	Mo_IGHV1-54*03	84.6	H1	13	H1-13-1	15	KASGYAFTSYLIH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-54*03	91.8	Mo_IGHV1-54*03	60.0	H2	10	H2-10-3	19	VINPRSGDSH	BBBBLALBBB
D	heavy	Mus.musculus	Mo_IGHV1-54*03	91.8	Mo_IGHV1-54*03	100.0	H3	8	H3-8-*	-1	ARSDYGAY	BBbLALAB
D	heavy	Mus.musculus	Mo_IGHV1-54*03	91.8	Mo_IGHV1-54*03	87.5	H4	8	H4-8-1	10	ADQSSSTA	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV5-43*01	94.2	Mo_IGKV5-43*01	100.0	L1	11	L1-11-1	23	RASQSISNNLH	BBABBAEABBB
D	kappa	Mus.musculus	Mo_IGKV5-43*01	94.2	Mo_IGKV5-43*01	87.5	L2	8	L2-8-1	26	KYASQSIF	BLLABBBB
D	kappa	Mus.musculus	Mo_IGKV5-43*01	94.2	Mo_IGKV5-43*01	100.0	L3	9	L3-9-cis7-1	20	QQSNSWPHT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV5-43*01	94.2	Mo_IGKV5-43*01	83.3	L4	6	L4-6-1	19	GSGTEF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022