PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4DVB

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV5-6-5*01	91.8	Mo_IGHV5-6-5*01	84.6	H1	13	H1-13-1	7	SASGFTFSRYAMS	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV5-6-5*01	91.8	Mo_IGHV5-6-5*01	77.8	H2	9	H2-9-1	6	SITNGGSTY	BBBAALBBB
A	heavy	Mus.musculus	Mo_IGHV5-6-5*01	91.8	Mo_IGHV5-6-5*01	50.0	H3	11	H3-11-*	-1	ERGELTYAMDY	BBEBAAAEBAB
A	heavy	Mus.musculus	Mo_IGHV5-6-5*01	91.8	Mo_IGHV5-6-5*01	100.0	H4	8	H4-8-1	8	RDNARNIL	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV4-57-1*01	98.5	Mo_IGKV4-57-1*01	75.0	L1	12	L1-12-1	10	RASSTVSfHYLH	BBABBBBAAABB
B	kappa	Mus.musculus	Mo_IGKV4-57-1*01	98.5	Mo_IGKV4-57-1*01	87.5	L2	8	L2-8-1	5	YATSNLAS	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV4-57-1*01	98.5	Mo_IGKV4-57-1*01	62.5	L3	9	L3-9-cis7-*	-1	QHYSAYPRT	BBAABBaBA
B	kappa	Mus.musculus	Mo_IGKV4-57-1*01	98.5	Mo_IGKV4-57-1*01	100.0	L4	6	L4-6-1	11	GSGTSY	EBEABB
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	91.8	Mo_IGHV5-6-5*01	84.6	H1	13	H1-13-1	9	SASGFTFSRYAMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	91.8	Mo_IGHV5-6-5*01	77.8	H2	9	H2-9-1	6	SITNGGSTY	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	91.8	Mo_IGHV5-6-5*01	50.0	H3	11	H3-11-*	-1	ERGELTYAMDY	BBEBAAAEBAB
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	91.8	Mo_IGHV5-6-5*01	100.0	H4	8	H4-8-1	6	RDNARNIL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV4-57-1*01	98.5	Mo_IGKV4-57-1*01	75.0	L1	12	L1-12-1	9	RASSTVSfHYLH	BBABBBBAAABB
L	kappa	Mus.musculus	Mo_IGKV4-57-1*01	98.5	Mo_IGKV4-57-1*01	87.5	L2	8	L2-8-1	5	YATSNLAS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV4-57-1*01	98.5	Mo_IGKV4-57-1*01	62.5	L3	9	L3-9-cis7-*	-1	QHYSAYPRT	BBAABBaBA
L	kappa	Mus.musculus	Mo_IGKV4-57-1*01	98.5	Mo_IGKV4-57-1*01	100.0	L4	6	L4-6-1	12	GSGTSY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022