PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4DKF

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	69.2	H1	13	H1-13-1	16	AASGFSFTSYGIS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	40.0	H2	10	H2-10-1	20	HIDWYGGDTD	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	50.0	H3	11	H3-11-*	-1	ARGGPDYAMDV	BBEEAABBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	8	ADTSKNTA	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	69.2	H1	13	H1-13-1	14	AASGFSFTSYGIS	BBBLBBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	40.0	H2	10	H2-10-1	18	HIDWYGGDTD	BBBAAALBBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	50.0	H3	11	H3-11-*	-1	ARGGPDYAMDV	BBEEBLBBBAB
I	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	7	ADTSKNTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	90.9	L1	11	L1-11-1	6	RASQSISSYLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	9	YGASSRAS	BLEABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	57.1	L3	9	L3-9-cis7-1	5	QQYWSEPVT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	90.9	L1	11	L1-11-1	8	RASQSISSYLA	BBABBAEABBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	8	YGASSRAS	BLLABBBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	57.1	L3	9	L3-9-cis7-1	4	QQYWSEPVT	BBAABBbBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022