PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4D9Q

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	kappa	Homo.sapiens	Hu_IGKV1-27*01	98.6	Mo_IGKV17-121*01	100.0	L1	11	L1-11-1	5	ITSTDIDDDMN	BBABBAEABBB
D	kappa	Homo.sapiens	Hu_IGKV1-27*01	98.6	Mo_IGKV17-121*01	87.5	L2	8	L2-8-*	-1	SGGNTLRP	BBLLBBBB
D	kappa	Homo.sapiens	Hu_IGKV1-27*01	98.6	Hu_IGKV1-27*01	28.6	L3	9	L3-9-cis7-1	15	LQSDSLPYT	BBAABBbBB
D	kappa	Homo.sapiens	Hu_IGKV1-27*01	98.6	Hu_IGKV1-27*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV7-4-1*02	93.2	Mo_IGHV9-1*02	100.0	H1	13	H1-13-1	11	KASGYTFTNYGMN	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV7-4-1*02	93.2	Mo_IGHV9-1*02	90.0	H2	10	H2-10-1	10	WINTYTGETT	BBBAAALBBB
E	heavy	Homo.sapiens	Hu_IGHV7-4-1*02	93.2	Hu_IGHV7-4-1*02	50.0	H3	8	H3-8-*	-1	EREGGVNN	BBBEEBBB
E	heavy	Homo.sapiens	Hu_IGHV7-4-1*02	93.2	Hu_IGHV7-4-1*02	100.0	H4	8	H4-8-1	10	LDTSVSTA	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV7-4-1*02	93.2	Mo_IGHV9-1*02	100.0	H1	13	H1-13-1	10	KASGYTFTNYGMN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV7-4-1*02	93.2	Mo_IGHV9-1*02	90.0	H2	10	H2-10-1	10	WINTYTGETT	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV7-4-1*02	93.2	Hu_IGHV7-4-1*02	50.0	H3	8	H3-8-*	-1	EREGGVNN	BBBEEBBB
H	heavy	Homo.sapiens	Hu_IGHV7-4-1*02	93.2	Hu_IGHV7-4-1*02	100.0	H4	8	H4-8-1	10	LDTSVSTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-27*01	98.6	Mo_IGKV17-121*01	100.0	L1	11	L1-11-1	6	ITSTDIDDDMN	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-27*01	98.6	Mo_IGKV17-121*01	87.5	L2	8	L2-8-*	-1	SGGNTLRP	BBLLBBBB
L	kappa	Homo.sapiens	Hu_IGKV1-27*01	98.6	Hu_IGKV1-27*01	28.6	L3	9	L3-9-cis7-1	14	LQSDSLPYT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-27*01	98.6	Hu_IGKV1-27*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022