PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4CMH

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	heavy	Mus.musculus	Mo_IGHV1-87*01	83.6	Mo_IGHV1-87*01	92.3	H1	13	H1-13-1	7	KASGYTFTDYWMQ	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-87*01	83.6	Mo_IGHV1-87*01	80.0	H2	10	H2-10-1	9	TIYPGDGDTG	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1-87*01	83.6	Mo_IGHV1-87*01	50.0	H3	13	H3-13-*	-1	ARGDYYGSNSLDY	BBBBAAALLBBAB
B	heavy	Mus.musculus	Mo_IGHV1-87*01	83.6	Mo_IGHV1-87*01	75.0	H4	8	H4-8-1	5	ADKSSKTV	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV6-17*01	89.9	Mo_IGKV6-17*01	90.9	L1	11	L1-11-1	8	KASQDVSTVVA	BBABBAEABBB
C	kappa	Mus.musculus	Mo_IGKV6-17*01	89.9	Mo_IGKV6-17*01	87.5	L2	8	L2-8-1	15	YSASYRYI	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV6-17*01	89.9	Mo_IGKV6-17*01	85.7	L3	9	L3-9-cis7-1	20	QQHYSPPYT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV6-17*01	89.9	Mo_IGKV6-17*01	83.3	L4	6	L4-6-1	5	GAGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022