PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4CAD

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L1	11	L1-11-2	5	RASGNIHNYLA	BBABBALLBBB
A	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L2	8	L2-8-1	7	YNAKTLAD	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L3	9	L3-9-cis7-1	8	QHFWSTPWT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L4	6	L4-6-1	8	GSGTQY	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	76.9	H1	13	H1-13-1	9	KATGYKFSSYWIE	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	80.0	H2	10	H2-10-3	11	EIFPGSGNTN	BBBBLALBBB
B	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	100.0	H3	18	H3-18-*	-1	ARRGafysYGSSYYAMDF
B	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	100.0	H4	8	H4-8-1	11	ADTSSNTA	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L1	11	L1-11-2	4	RASGNIHNYLA	BBABBALLBBB
D	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L2	8	L2-8-1	7	YNAKTLAD	BLLABBBB
D	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L3	9	L3-9-cis7-1	9	QHFWSTPWT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L4	6	L4-6-1	13	GSGTQY	EBEABB
E	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	76.9	H1	13	H1-13-1	8	KATGYKFSSYWIE	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	80.0	H2	10	H2-10-3	11	EIFPGSGNTN	BBBBLALBBB
E	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	100.0	H3	18	H3-18-*	-1	ARRGafysYGSSYYAMDF
E	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	100.0	H4	8	H4-8-1	8	ADTSSNTA	BBAAALBB
G	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L1	11	L1-11-2	4	RASGNIHNYLA	BBABBALLBBB
G	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L2	8	L2-8-1	8	YNAKTLAD	BLLABBBB
G	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L3	9	L3-9-cis7-1	7	QHFWSTPWT	BBAABBbBB
G	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L4	6	L4-6-1	9	GSGTQY	EBEABB
H	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	76.9	H1	13	H1-13-1	9	KATGYKFSSYWIE	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	80.0	H2	10	H2-10-3	12	EIFPGSGNTN	BBBBLALBBB
H	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	100.0	H3	18	H3-18-*	-1	ARRGafysYGSSYYAMDF
H	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	100.0	H4	8	H4-8-1	12	ADTSSNTA	BBAAALBB
J	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L1	11	L1-11-2	5	RASGNIHNYLA	BBABBALLBBB
J	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L2	8	L2-8-1	8	YNAKTLAD	BLLABBBB
J	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L3	9	L3-9-cis7-1	7	QHFWSTPWT	BBAABBbBB
J	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L4	6	L4-6-1	10	GSGTQY	EBEABB
K	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	76.9	H1	13	H1-13-1	10	KATGYKFSSYWIE	BBBLBBAAABBBB
K	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	80.0	H2	10	H2-10-3	12	EIFPGSGNTN	BBBBLALBBB
K	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	100.0	H3	18	H3-18-*	-1	ARRGafysYGSSYYAMDF
K	heavy	Mus.musculus	Mo_IGHV1-9*01	93.2	Mo_IGHV1-9*01	100.0	H4	8	H4-8-1	11	ADTSSNTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022