PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4AT6

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	69.2	H1	13	H1-13-*	-1	TASGYSFSSYNIH	BBBAEEEBLABBB
A	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	90.0	H2	10	H2-10-1	17	VIYPGNGDTS	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	0.0	H3	10	H3-10-*	-1	ARGGSGLLAY	BBEBBLBBAB
A	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	100.0	H4	8	H4-8-*	-1	ADKSSSTA	BBAAALBB
B	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L1	14	L1-14-*	-1	RSSTGAVTtSNYAN	BBABEBBBAAALBB
B	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L2	8	L2-8-1	12	GGTNNRAP	BLEABBBB
B	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	87.5	L3	9	L3-9-4	19	ALWYSNHLV	BBBBEBBBB
B	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L4	6	L4-6-2	23	LIGDKA	BBEABB
C	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	69.2	H1	13	H1-13-*	-1	TASGYSFSSYNIH	BEBBBLBELABBB
C	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	90.0	H2	10	H2-10-1	12	VIYPGNGDTS	BBBAAALBBB
C	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	0.0	H3	10	H3-10-*	-1	ARGGSGLLAY	BBEBBLBBAB
C	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	100.0	H4	8	H4-8-*	-1	ADKSSSTA	BBAAALBB
D	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L1	14	L1-14-1	16	RSSTGAVTtSNYAN	BBAAEBBBAAALBB
D	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L2	8	L2-8-1	13	GGTNNRAP	BLLABBBB
D	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	87.5	L3	9	L3-9-4	19	ALWYSNHLV	BBBBEBBBB
D	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L4	6	L4-6-2	22	LIGDKA	BBEABB
E	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	69.2	H1	13	H1-13-*	-1	TASGYSFSSYNIH	BBAAEBEBLABBB
E	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	90.0	H2	10	H2-10-1	9	VIYPGNGDTS	BBBAAALBBB
E	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	0.0	H3	10	H3-10-*	-1	ARGGSGLLAY	BBEBBLBBAB
E	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	100.0	H4	8	H4-8-*	-1	ADKSSSTA	BBBAAEEB
F	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L1	14	L1-14-*	-1	RSSTGAVTtSNYAN	BBABEBBBAAALBB
F	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L2	8	L2-8-1	12	GGTNNRAP	BLEABBBB
F	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	87.5	L3	9	L3-9-4	20	ALWYSNHLV	BBBBEBBBB
F	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L4	6	L4-6-2	22	LIGDKA	BBEABB
G	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	69.2	H1	13	H1-13-*	-1	tasgysfSSYNIH
G	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	90.0	H2	10	H2-10-1	20	VIYPGNGDTS	BBBAAALBBB
G	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	0.0	H3	10	H3-10-*	-1	ARGGSGLLAY	BBEBBLBBAB
G	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	100.0	H4	8	H4-8-*	-1	ADKSSSTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	69.2	H1	13	H1-13-*	-1	TASGYSFSSYNIH	BBABEBEBLABBB
H	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	90.0	H2	10	H2-10-1	14	VIYPGNGDTS	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	0.0	H3	10	H3-10-*	-1	ARGGSGLLAY	BBEBBLBBAB
H	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	100.0	H4	8	H4-8-*	-1	ADKSSSTA	BBAAALBB
I	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L1	14	L1-14-*	-1	RSSTGAVTtSNYAN	BBABEBBBAAALBB
I	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L2	8	L2-8-1	13	GGTNNRAP	BLEABBBB
I	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	87.5	L3	9	L3-9-4	19	ALWYSNHLV	BBBBEBBBB
I	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L4	6	L4-6-2	26	LIGDKA	BBEABB
J	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	69.2	H1	13	H1-13-*	-1	TasgysFSSYNIH
J	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	90.0	H2	10	H2-10-1	14	VIYPGNGDTS	BBBAAALBBB
J	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	0.0	H3	10	H3-10-*	-1	ARGGSGLLAY	BBEBBLBBAB
J	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	100.0	H4	8	H4-8-*	-1	ADKSSSTA	BBAAALBB
K	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L1	14	L1-14-*	-1	RSSTGAVTtSNYAN	BBABEBBBAAALBB
K	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L2	8	L2-8-1	15	GGTNNRAP	BLEABBBB
K	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	87.5	L3	9	L3-9-4	18	ALWYSNHLV	BBBBEBBBB
K	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L4	6	L4-6-2	24	LIGDKA	BBEABB
L	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L1	14	L1-14-*	-1	RSSTGAVTtSNYAN	BBABEBBBAAALBB
L	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L2	8	L2-8-1	13	GGTNNRAP	BLEABBBB
L	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	87.5	L3	9	L3-9-4	20	ALWYSNHLV	BBBBEBBBB
L	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L4	6	L4-6-2	23	LIGDKA	BBEABB
M	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	69.2	H1	13	H1-13-*	-1	tasgysfSSYNIH
M	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	90.0	H2	10	H2-10-1	12	VIYPGNGDTS	BBBAAALBBB
M	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	0.0	H3	10	H3-10-*	-1	ARGGSGLLAY	BBEBBLBBAB
M	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	100.0	H4	8	H4-8-*	-1	ADKSSSTA	BBAABABB
N	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L1	14	L1-14-*	-1	RSSTGAVTtSNYAN	BBABEBBBAAALBB
N	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L2	8	L2-8-1	14	GGTNNRAP	BLLABBBB
N	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	87.5	L3	9	L3-9-4	18	ALWYSNHLV	BBBBEBBBB
N	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L4	6	L4-6-2	22	LIGDKA	BBEABB
O	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	69.2	H1	13	H1-13-*	-1	tasgysFSSYNIH
O	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	90.0	H2	10	H2-10-1	17	VIYPGNGDTS	BBBAAALBBB
O	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	0.0	H3	10	H3-10-*	-1	ARGGSGLLAY	BBEBBLBBAB
O	heavy	Mus.musculus	Mo_IGHV1S121*01	93.4	Mo_IGHV1S121*01	100.0	H4	8	H4-8-1	20	ADKSSSTA	BBAAALBB
P	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L1	14	L1-14-*	-1	RSSTGAVTtSNYAN	BBABEBBBAAALBB
P	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L2	8	L2-8-1	16	GGTNNRAP	BLEABBBB
P	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	87.5	L3	9	L3-9-4	18	ALWYSNHLV	BBBBEBBBB
P	lambda	Mus.musculus	Mo_IGLV1*01	98.5	Mo_IGLV1*01	100.0	L4	6	L4-6-2	24	LIGDKA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022