PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4AM0

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Mo_IGHV1-55*01	87.5	Mo_IGHV1-55*01	84.6	H1	13	H1-13-1	12	KASGYTFSSYWIN	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Mo_IGHV1-55*01	87.5	Mo_IGHV1-55*01	70.0	H2	10	H2-10-1	20	NIYPGSGTVN	BBBAAALBBB
A	heavy	Homo.sapiens	Mo_IGHV1-55*01	87.5	Mo_IGHV1-55*01	50.0	H3	10	H3-10-*	-1	TRGGSHAMDY	BBBBAAEBAB
A	heavy	Homo.sapiens	Mo_IGHV1-55*01	87.5	Mo_IGHV1-55*01	75.0	H4	8	H4-8-1	8	IDTSSNTA	BBAAALBB
B	kappa	Homo.sapiens	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	90.9	L1	11	L1-11-1	9	KASQNVRTSVA	BBABBAEABBB
B	kappa	Homo.sapiens	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	100.0	L2	8	L2-8-1	12	YLASNRHT	BLLABBBB
B	kappa	Homo.sapiens	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	85.7	L3	9	L3-9-cis7-1	7	LQHWTYPYT	BBAABBbBB
B	kappa	Homo.sapiens	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Mo_IGHV1-55*01	87.5	Mo_IGHV1-55*01	84.6	H1	13	H1-13-1	12	KASGYTFSSYWIN	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Mo_IGHV1-55*01	87.5	Mo_IGHV1-55*01	70.0	H2	10	H2-10-1	19	NIYPGSGTVN	BBBAAALBBB
C	heavy	Homo.sapiens	Mo_IGHV1-55*01	87.5	Mo_IGHV1-55*01	50.0	H3	10	H3-10-*	-1	TRGGSHAMDY	BBBBAAEBAB
C	heavy	Homo.sapiens	Mo_IGHV1-55*01	87.5	Mo_IGHV1-55*01	75.0	H4	8	H4-8-1	7	IDTSSNTA	BBAAALBB
D	kappa	Homo.sapiens	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	90.9	L1	11	L1-11-1	10	KASQNVRTSVA	BBABBAEABBB
D	kappa	Homo.sapiens	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	100.0	L2	8	L2-8-1	12	YLASNRHT	BLLABBBB
D	kappa	Homo.sapiens	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	85.7	L3	9	L3-9-cis7-1	7	LQHWTYPYT	BBAABBbBB
D	kappa	Homo.sapiens	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Mo_IGHV1-55*01	87.5	Mo_IGHV1-55*01	84.6	H1	13	H1-13-1	13	KASGYTFSSYWIN	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Mo_IGHV1-55*01	87.5	Mo_IGHV1-55*01	70.0	H2	10	H2-10-1	20	NIYPGSGTVN	BBBAAALBBB
E	heavy	Homo.sapiens	Mo_IGHV1-55*01	87.5	Mo_IGHV1-55*01	50.0	H3	10	H3-10-*	-1	TRGGSHAMDY	BBBEAAEBAB
E	heavy	Homo.sapiens	Mo_IGHV1-55*01	87.5	Mo_IGHV1-55*01	75.0	H4	8	H4-8-1	7	IDTSSNTA	BBAAALBB
F	kappa	Homo.sapiens	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	90.9	L1	11	L1-11-1	9	KASQNVRTSVA	BBABBAEABBB
F	kappa	Homo.sapiens	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	100.0	L2	8	L2-8-1	12	YLASNRHT	BLLABBBB
F	kappa	Homo.sapiens	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	85.7	L3	9	L3-9-cis7-1	6	LQHWTYPYT	BBAABBbBB
F	kappa	Homo.sapiens	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Mo_IGHV1-55*01	87.5	Mo_IGHV1-55*01	84.6	H1	13	H1-13-1	12	KASGYTFSSYWIN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Mo_IGHV1-55*01	87.5	Mo_IGHV1-55*01	70.0	H2	10	H2-10-1	20	NIYPGSGTVN	BBBAAALBBB
H	heavy	Homo.sapiens	Mo_IGHV1-55*01	87.5	Mo_IGHV1-55*01	50.0	H3	10	H3-10-*	-1	TRGGSHAMDY	BBBEAAEBAB
H	heavy	Homo.sapiens	Mo_IGHV1-55*01	87.5	Mo_IGHV1-55*01	75.0	H4	8	H4-8-1	8	IDTSSNTA	BBAAALBB
L	kappa	Homo.sapiens	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	90.9	L1	11	L1-11-1	10	KASQNVRTSVA	BBABBAEABBB
L	kappa	Homo.sapiens	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	100.0	L2	8	L2-8-1	12	YLASNRHT	BLLABBBB
L	kappa	Homo.sapiens	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	85.7	L3	9	L3-9-cis7-1	7	LQHWTYPYT	BBAABBbBB
L	kappa	Homo.sapiens	Mo_IGKV6-14*01	100.0	Mo_IGKV6-14*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022