PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3ZKN

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Mus.musculus	Mo_IGHV2-9*02	90.4	Mo_IGHV2-9*02	92.3	H1	13	H1-13-1	13	TVSGFSLTRYGVH	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV2-9*02	90.4	Mo_IGHV2-9*02	88.9	H2	9	H2-9-1	8	VIWAGGTTN	BBBAALBBB
C	heavy	Mus.musculus	Mo_IGHV2-9*02	90.4	Mo_IGHV2-9*02	0.0	H3	10	H3-10-2	26	VKAYRNAMDY	BBBBEABBAB
C	heavy	Mus.musculus	Mo_IGHV2-9*02	90.4	Mo_IGHV2-9*02	100.0	H4	8	H4-8-1	9	KDNSKSQV	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV3-10*01	92.6	Mo_IGKV3-10*01	73.3	L1	15	L1-15-1	8	RASKSVDTYghsfIH	BBABBABBLLBBBBB
D	kappa	Mus.musculus	Mo_IGKV3-10*01	92.6	Mo_IGKV3-10*01	87.5	L2	8	L2-8-1	13	HLASNLES	BLLABBBB
D	kappa	Mus.musculus	Mo_IGKV3-10*01	92.6	Mo_IGKV3-10*01	100.0	L3	9	L3-9-cis7-1	9	QQNNEDPWT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV3-10*01	92.6	Mo_IGKV3-10*01	83.3	L4	6	L4-6-1	5	GSGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV2-9*02	90.4	Mo_IGHV2-9*02	92.3	H1	13	H1-13-1	13	TVSGFSLTRYGVH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV2-9*02	90.4	Mo_IGHV2-9*02	88.9	H2	9	H2-9-1	8	VIWAGGTTN	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV2-9*02	90.4	Mo_IGHV2-9*02	0.0	H3	10	H3-10-2	26	VKAYRNAMDY	BBBBEABBAB
H	heavy	Mus.musculus	Mo_IGHV2-9*02	90.4	Mo_IGHV2-9*02	100.0	H4	8	H4-8-1	9	KDNSKSQV	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV3-10*01	92.6	Mo_IGKV3-10*01	73.3	L1	15	L1-15-1	10	RASKSVDTYghsfIH	BBABBABBLLBBBBB
L	kappa	Mus.musculus	Mo_IGKV3-10*01	92.6	Mo_IGKV3-10*01	87.5	L2	8	L2-8-1	11	HLASNLES	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV3-10*01	92.6	Mo_IGKV3-10*01	100.0	L3	9	L3-9-cis7-1	9	QQNNEDPWT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV3-10*01	92.6	Mo_IGKV3-10*01	83.3	L4	6	L4-6-1	6	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022