PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3WBD

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV1-84*01	97.3	Mo_IGHV1-84*01	92.3	H1	13	H1-13-1	8	KASGYTFTDYYIH	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV1-84*01	97.3	Mo_IGHV1-84*01	100.0	H2	10	H2-10-1	8	WIYPGSGNTK	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV1-84*01	97.3	Mo_IGHV1-84*01	100.0	H3	10	H3-10-*	-1	ARGGKFAMDY	BBBBAABBAB
A	heavy	Mus.musculus	Mo_IGHV1-84*01	97.3	Mo_IGHV1-84*01	100.0	H4	8	H4-8-1	5	VDTSSSTA	BBAAALBB
A	kappa	Mus.musculus	Mo_IGKV1-110*02	98.6	Mo_IGKV1-110*02	100.0	L1	16	L1-16-1	5	RSSQSLvhsngNTYLY	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV1-110*02	98.6	Mo_IGKV1-110*02	100.0	L2	8	L2-8-1	7	YRVSNRFS	BLEABBBB
A	kappa	Mus.musculus	Mo_IGKV1-110*02	98.6	Mo_IGKV1-110*02	100.0	L3	9	L3-9-cis7-1	10	FQGTHVPYT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV1-110*02	98.6	Mo_IGKV1-110*02	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1-84*01	97.3	Mo_IGHV1-84*01	92.3	H1	13	H1-13-1	8	KASGYTFTDYYIH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-84*01	97.3	Mo_IGHV1-84*01	100.0	H2	10	H2-10-1	8	WIYPGSGNTK	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1-84*01	97.3	Mo_IGHV1-84*01	100.0	H3	10	H3-10-*	-1	ARGGKFAMDY	BBBBAABBAB
B	heavy	Mus.musculus	Mo_IGHV1-84*01	97.3	Mo_IGHV1-84*01	100.0	H4	8	H4-8-1	6	VDTSSSTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV1-110*02	98.6	Mo_IGKV1-110*02	100.0	L1	16	L1-16-1	11	RSSQSLvhsngNTYLY	BBABBABBAALBBBBB
B	kappa	Mus.musculus	Mo_IGKV1-110*02	98.6	Mo_IGKV1-110*02	100.0	L2	8	L2-8-1	8	YRVSNRFS	BLEABBBB
B	kappa	Mus.musculus	Mo_IGKV1-110*02	98.6	Mo_IGKV1-110*02	100.0	L3	9	L3-9-cis7-1	10	FQGTHVPYT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV1-110*02	98.6	Mo_IGKV1-110*02	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022