PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3VRL

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	heavy	Mus.musculus	Mo_IGHV5-6-4*01	98.6	Mo_IGHV5-6-4*01	100.0	H1	13	H1-13-1	12	AASGFTFSSYTMS	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV5-6-4*01	98.6	Mo_IGHV5-6-4*01	90.0	H2	10	H2-10-2	16	IISSGGSYTY	BBBAALABBB
E	heavy	Mus.musculus	Mo_IGHV5-6-4*01	98.6	Mo_IGHV5-6-4*01	100.0	H3	15	H3-15-*	-1	TRDEGNgNYVEAMDY
E	heavy	Mus.musculus	Mo_IGHV5-6-4*01	98.6	Mo_IGHV5-6-4*01	100.0	H4	8	H4-8-1	12	RDNAKNTL	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV12-41*01	100.0	Mo_IGKV12-41*01	100.0	L1	11	L1-11-2	14	RASGNIHNYLA	BBABBALLBBB
F	kappa	Mus.musculus	Mo_IGKV12-41*01	100.0	Mo_IGKV12-41*01	100.0	L2	8	L2-8-1	14	YNAKTLAD	BLLABBBB
F	kappa	Mus.musculus	Mo_IGKV12-41*01	100.0	Mo_IGKV12-41*01	100.0	L3	9	L3-9-2	19	QHFWSTPRT	BBAABABBB
F	kappa	Mus.musculus	Mo_IGKV12-41*01	100.0	Mo_IGKV12-41*01	100.0	L4	6	L4-6-1	19	GSGTQY	EBEABB
H	heavy	Mus.musculus	Mo_IGHV5-6-4*01	98.6	Mo_IGHV5-6-4*01	100.0	H1	13	H1-13-1	12	AASGFTFSSYTMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-6-4*01	98.6	Mo_IGHV5-6-4*01	90.0	H2	10	H2-10-2	19	IISSGGSYTY	BBBAALABBB
H	heavy	Mus.musculus	Mo_IGHV5-6-4*01	98.6	Mo_IGHV5-6-4*01	100.0	H3	15	H3-15-*	-1	TRDEGNgNYVEAMDY
H	heavy	Mus.musculus	Mo_IGHV5-6-4*01	98.6	Mo_IGHV5-6-4*01	100.0	H4	8	H4-8-1	6	RDNAKNTL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV12-41*01	100.0	Mo_IGKV12-41*01	100.0	L1	11	L1-11-2	10	RASGNIHNYLA	BBABBALLBBB
L	kappa	Mus.musculus	Mo_IGKV12-41*01	100.0	Mo_IGKV12-41*01	100.0	L2	8	L2-8-1	14	YNAKTLAD	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV12-41*01	100.0	Mo_IGKV12-41*01	100.0	L3	9	L3-9-2	19	QHFWSTPRT	BBAABABBB
L	kappa	Mus.musculus	Mo_IGKV12-41*01	100.0	Mo_IGKV12-41*01	100.0	L4	6	L4-6-1	10	GSGTQY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022