PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3VI4

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	kappa	Mus.musculus	Mo_IGKV2-137*01	91.3	Mo_IGKV2-137*01	93.8	L1	16	L1-16-1	17	RSNKSLlhsngNTYLY	BBABBABBAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV2-137*01	91.3	Mo_IGKV2-137*01	87.5	L2	8	L2-8-*	-1	FRMSNLAS	ABLABBBB
E	kappa	Mus.musculus	Mo_IGKV2-137*01	91.3	Mo_IGKV2-137*01	85.7	L3	9	L3-9-cis7-1	13	LQHLEYPFT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV2-137*01	91.3	Mo_IGKV2-137*01	100.0	L4	6	L4-6-3	12	GSGTAF	EBAABB
F	heavy	Mus.musculus	Mo_IGHV1-9*01	91.8	Mo_IGHV1-9*01	92.3	H1	13	H1-13-1	13	KATGYTFTSYWIE	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV1-9*01	91.8	Mo_IGHV1-9*01	70.0	H2	10	H2-10-*	-1	EILPGSGYIH	BBBAABBBBB
F	heavy	Mus.musculus	Mo_IGHV1-9*01	91.8	Mo_IGHV1-9*01	50.0	H3	11	H3-11-*	-1	SRALALYAMDY	BBBBAABBLAB
F	heavy	Mus.musculus	Mo_IGHV1-9*01	91.8	Mo_IGHV1-9*01	87.5	H4	8	H4-8-1	10	TDTSSNTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV1-9*01	91.8	Mo_IGHV1-9*01	92.3	H1	13	H1-13-1	14	KATGYTFTSYWIE	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-9*01	91.8	Mo_IGHV1-9*01	70.0	H2	10	H2-10-*	-1	EILPGSGYIH	BBBAABABBB
H	heavy	Mus.musculus	Mo_IGHV1-9*01	91.8	Mo_IGHV1-9*01	50.0	H3	11	H3-11-*	-1	SRALALYAMDY	BBBBAABBLAB
H	heavy	Mus.musculus	Mo_IGHV1-9*01	91.8	Mo_IGHV1-9*01	87.5	H4	8	H4-8-1	16	TDTSSNTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV2-137*01	91.3	Mo_IGKV2-137*01	93.8	L1	16	L1-16-1	12	RSNKSLlhsngNTYLY	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV2-137*01	91.3	Mo_IGKV2-137*01	87.5	L2	8	L2-8-1	12	FRMSNLAS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV2-137*01	91.3	Mo_IGKV2-137*01	85.7	L3	9	L3-9-cis7-1	11	LQHLEYPFT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV2-137*01	91.3	Mo_IGKV2-137*01	100.0	L4	6	L4-6-3	14	GSGTAF	EBAABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022