PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3VFG

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV2-9*02	97.3	Mo_IGHV2-9*02	84.6	H1	13	H1-13-1	11	TVSGFSVTNYGVH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV2-9*02	97.3	Mo_IGHV2-9*02	88.9	H2	9	H2-9-1	9	VIWAGGITN	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV2-9*02	97.3	Mo_IGHV2-9*02	50.0	H3	13	H3-13-*	-1	ASRGGHYGYALDY	BBBABBAEABBAB
H	heavy	Mus.musculus	Mo_IGHV2-9*02	97.3	Mo_IGHV2-9*02	100.0	H4	8	H4-8-1	7	KDNSKSQV	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV6-32*01	97.1	Mo_IGKV6-32*01	90.9	L1	11	L1-11-1	9	KASQSVSNDVT	BBABBAEABBB
L	kappa	Mus.musculus	Mo_IGKV6-32*01	97.1	Mo_IGKV6-32*01	75.0	L2	8	L2-8-*	-1	YSASNRYS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV6-32*01	97.1	Mo_IGKV6-32*01	0.0	L3	6	L3-6-*	-1	QQDYSS
L	kappa	Mus.musculus	Mo_IGKV6-32*01	97.1	Mo_IGKV6-32*01	83.3	L4	6	L4-6-1	14	GYGTAF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022