PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3V6Z

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	100.0	H1	13	H1-13-1	7	AASGFTFSSYGMS	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	80.0	H2	10	H2-10-2	8	TISSGGNYIY	BBBAALABBB
A	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	50.0	H3	16	H3-16-*	-1	TREGAYSgsSSYPMDY
A	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	100.0	H4	8	H4-8-1	7	RDNAKNTL	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV8-27*01	97.1	Mo_IGKV8-27*01	100.0	L1	17	L1-17-*	-1	KSSQSVlyssnqKNYLA	BBABBABALAALBBBBB
B	kappa	Mus.musculus	Mo_IGKV8-27*01	97.1	Mo_IGKV8-27*01	100.0	L2	8	L2-8-1	8	YWASTRES	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV8-27*01	97.1	Mo_IGKV8-27*01	100.0	L3	10	L3-10-*	-1	HQYlSSYMYT	BBAAALABBB
B	kappa	Mus.musculus	Mo_IGKV8-27*01	97.1	Mo_IGKV8-27*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
C	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	100.0	H1	13	H1-13-1	7	AASGFTFSSYGMS	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	80.0	H2	10	H2-10-2	8	TISSGGNYIY	BBBAALABBB
C	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	50.0	H3	16	H3-16-*	-1	TREGAYSgsSSYPMDY
C	heavy	Mus.musculus	Mo_IGHV5-6*01	98.6	Mo_IGHV5-6*01	100.0	H4	8	H4-8-1	7	RDNAKNTL	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV8-27*01	97.1	Mo_IGKV8-27*01	100.0	L1	17	L1-17-*	-1	KSSQSVlyssnqKNYLA	BBABBABALAALBBBBB
D	kappa	Mus.musculus	Mo_IGKV8-27*01	97.1	Mo_IGKV8-27*01	100.0	L2	8	L2-8-1	8	YWASTRES	BLLABBBB
D	kappa	Mus.musculus	Mo_IGKV8-27*01	97.1	Mo_IGKV8-27*01	100.0	L3	10	L3-10-*	-1	HQYlSSYMYT	BBAAALABBB
D	kappa	Mus.musculus	Mo_IGKV8-27*01	97.1	Mo_IGKV8-27*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022