PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3UPC

#CDRs = 4; #Clusters = 4.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	11	AASGFTFSDEDMS	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	11	AISGSGGSTY	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H3	9	H3-9-*	-1	AKSYGAFDY	BBAAAABBA
A	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	11	AASGFTFSDEDMS	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	10	AISGSGGSTY	BBBAALABBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H3	9	H3-9-*	-1	AKSYGAFDY	BBAAAAeBA
B	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
C	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	11	AASGFTFSDEDMS	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	10	AISGSGGSTY	BBBAALABBB
C	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H3	9	H3-9-*	-1	AKSYGAFDY	BBAAAABBA
C	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	11	AASGFTFSDEDMS	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	11	AISGSGGSTY	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H3	9	H3-9-*	-1	AKSYGAFDY	BBAAAABBA
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
E	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	11	AASGFTFSDEDMS	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	10	AISGSGGSTY	BBBAALABBB
E	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H3	9	H3-9-*	-1	AKSYGAFDY	BBAAAAeBA
E	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	12	AASGFTFSDEDMS	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	11	AISGSGGSTY	BBBAALABBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H3	9	H3-9-*	-1	AKSYGAFDY	BBAAAABBA
F	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
G	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	11	AASGFTFSDEDMS	BBBLBBAAABBBB
G	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	10	AISGSGGSTY	BBBAALABBB
G	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H3	9	H3-9-*	-1	AKSYGAFDY	BBAAAAeBA
G	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	11	AASGFTFSDEDMS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	10	AISGSGGSTY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H3	9	H3-9-*	-1	AKSYGAFDY	BBAAAAeBA
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	11	AASGFTFSDEDMS	BBBLBBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	10	AISGSGGSTY	BBBAALABBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H3	9	H3-9-*	-1	AKSYGAFDY	BBAAAAeBA
I	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	11	AASGFTFSDEDMS	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	10	AISGSGGSTY	BBBAALABBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H3	9	H3-9-*	-1	AKSYGAFDY	BBAAAABBA
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022